recipe bioconductor-oct4

Conditional knockdown of OCT4 in mouse ESCs

Homepage:

https://bioconductor.org/packages/3.16/data/experiment/html/oct4.html

License:

GPL (>= 2)

Recipe:

/bioconductor-oct4/meta.yaml

This package provides the output of running Salmon on a set of 12 RNA-seq samples from King & Klose, "The pioneer factor OCT4 requires the chromatin remodeller BRG1 to support gene regulatory element function in mouse embryonic stem cells", published in eLIFE, March 2017. For details on version numbers and how the samples were processed see the package vignette.

package bioconductor-oct4

(downloads) docker_bioconductor-oct4

Versions:
1.13.0-0,  1.10.0-1,  1.10.0-0,  1.8.0-0,  1.6.0-1,  1.6.0-0,  1.5.0-0,  1.4.0-0,  1.2.0-0, 

1.13.0-0,  1.10.0-1,  1.10.0-0,  1.8.0-0,  1.6.0-1,  1.6.0-0,  1.5.0-0,  1.4.0-0,  1.2.0-0,  1.0.0-1,  1.0.0-0

Depends:
Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-oct4

and update with:

conda update bioconductor-oct4

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-oct4:<tag>

(see bioconductor-oct4/tags for valid values for <tag>)

Download stats

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-oct4/README.html)