recipe bioconductor-octad.db

Open Cancer TherApeutic Discovery (OCTAD) database

Homepage:

https://bioconductor.org/packages/3.20/data/experiment/html/octad.db.html

License:

Artistic-2.0

Recipe:

/bioconductor-octad.db/meta.yaml

Open Cancer TherApeutic Discovery (OCTAD) package implies sRGES approach for the drug discovery. The essential idea is to identify drugs that reverse the gene expression signature of a disease by tamping down over-expressed genes and stimulating weakly expressed ones. The following package contains all required precomputed data for whole OCTAD pipeline computation.

package bioconductor-octad.db

(downloads) docker_bioconductor-octad.db

versions:

1.8.0-0,  1.4.0-0,  1.2.0-0,  1.0.0-0

depends bioconductor-data-packages:

>=20241103

depends bioconductor-experimenthub:

>=2.14.0,<2.15.0

depends curl:

depends r-base:

>=4.4,<4.5.0a0

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-octad.db

and update with::

   mamba update bioconductor-octad.db

To create a new environment, run:

mamba create --name myenvname bioconductor-octad.db

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-octad.db:<tag>

(see `bioconductor-octad.db/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-octad.db/README.html)