Package Recipe 'bioconductor-odseq'

recipe bioconductor-odseq

Outlier detection in multiple sequence alignments

Homepage: https://bioconductor.org/packages/3.12/bioc/html/odseq.html
License: MIT + file LICENSE
Recipe: /bioconductor-odseq/meta.yaml

Performs outlier detection of sequences in a multiple sequence alignment using bootstrap of predefined distance metrics. Outlier sequences can make downstream analyses unreliable or make the alignments less accurate while they are being constructed. This package implements the OD-seq algorithm proposed by Jehl et al (doi 10.1186/s12859-015-0702-1) for aligned sequences and a variant using string kernels for unaligned sequences.

package bioconductor-odseq¶

Versions

1.18.0-0, 1.16.0-0, 1.14.0-0, 1.12.0-1, 1.10.0-0

Depends

bioconductor-kebabs >=1.24.0,<1.25.0
bioconductor-msa >=1.22.0,<1.23.0
r-base >=4.0,<4.1.0a0
r-mclust >=5.1

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-odseq

and update with:

conda update bioconductor-odseq

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-odseq:<tag>

(see bioconductor-odseq/tags for valid values for <tag>)

Link to this page¶

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-odseq/README.html)