-
recipe
bioconductor-odseq
Outlier detection in multiple sequence alignments
- Homepage
- License
MIT + file LICENSE
- Recipe
Performs outlier detection of sequences in a multiple sequence alignment using bootstrap of predefined distance metrics. Outlier sequences can make downstream analyses unreliable or make the alignments less accurate while they are being constructed. This package implements the OD-seq algorithm proposed by Jehl et al (doi 10.1186/s12859-015-0702-1) for aligned sequences and a variant using string kernels for unaligned sequences.
-
package
bioconductor-odseq
¶ -
- Versions
1.18.0-0
,1.16.0-0
,1.14.0-0
,1.12.0-1
,1.10.0-0
- Depends
bioconductor-kebabs
>=1.24.0,<1.25.0
bioconductor-msa
>=1.22.0,<1.23.0
r-base
>=4.0,<4.1.0a0
r-mclust
>=5.1
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-odseq
and update with:
conda update bioconductor-odseq
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-odseq:<tag>
(see bioconductor-odseq/tags for valid values for
<tag>
)
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-odseq/README.html)