recipe bioconductor-omicplotr

A Shiny app for visual exploration of omic datasets as compositions, and differential abundance analysis using ALDEx2. Useful for exploring RNA-seq, meta-RNA-seq, 16s rRNA gene sequencing with visualizations such as principal component analysis biplots (coloured using metadata for visualizing each variable), dendrograms and stacked bar plots, and effect plots (ALDEx2). Input is a table of counts and metadata file (if metadata exists), with options to filter data by count or by metadata to remove low counts, or to visualize select samples according to selected metadata.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/omicplotR.html

License

MIT + file LICENSE

Recipe

/bioconductor-omicplotr/meta.yaml

package bioconductor-omicplotr

(downloads) docker_bioconductor-omicplotr

Versions

1.2.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-omicplotr

and update with:

conda update bioconductor-omicplotr

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-omicplotr:<tag>

(see bioconductor-omicplotr/tags for valid values for <tag>)