- recipe bioconductor-omicrexposome
Exposome and omic data associatin and integration analysis
- Homepage
https://bioconductor.org/packages/3.14/bioc/html/omicRexposome.html
- License
MIT + file LICENSE
- Recipe
omicRexposome systematizes the association evaluation between exposures and omic data, taking advantage of MultiDataSet for coordinated data management, rexposome for exposome data definition and limma for association testing. Also to perform data integration mixing exposome and omic data using multi co-inherent analysis (omicade4) and multi-canonical correlation analysis (PMA).
- package bioconductor-omicrexposome¶
-
- Versions
1.16.0-0
,1.14.0-0
,1.12.1-0
,1.12.0-0
,1.9.0-0
,1.8.0-0
,1.6.0-1
,1.4.0-0
- Depends
bioconductor-biobase
>=2.54.0,<2.55.0
bioconductor-limma
>=3.50.0,<3.51.0
bioconductor-multidataset
>=1.22.0,<1.23.0
bioconductor-omicade4
>=1.34.0,<1.35.0
bioconductor-rexposome
>=1.16.0,<1.17.0
bioconductor-summarizedexperiment
>=1.24.0,<1.25.0
bioconductor-sva
>=3.42.0,<3.43.0
r-base
>=4.1,<4.2.0a0
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-omicrexposome
and update with:
conda update bioconductor-omicrexposome
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-omicrexposome:<tag>
(see bioconductor-omicrexposome/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-omicrexposome/README.html)