Package Recipe 'bioconductor-ompbam'

recipe bioconductor-ompbam

C++ Library for OpenMP-based multi-threaded sequential profiling of Binary Alignment Map (BAM) files

Homepage:: https://bioconductor.org/packages/3.16/bioc/html/ompBAM.html
License:: MIT + file LICENSE
Recipe:: /bioconductor-ompbam/meta.yaml

This packages provides C++ header files for developers wishing to create R packages that processes BAM files. ompBAM automates file access, memory management, and handling of multiple threads 'behind the scenes', so developers can focus on creating domain-specific functionality. The included vignette contains detailed documentation of this API, including quick-start instructions to create a new ompBAM-based package, and step-by-step explanation of the functionality behind the example packaged included within ompBAM.

package bioconductor-ompbam¶

Versions:

1.2.0-0

Depends:

bioconductor-zlibbioc >=1.44.0,<1.45.0
libblas >=3.9.0,<4.0a0
libgcc-ng >=12
liblapack >=3.9.0,<4.0a0
libstdcxx-ng >=12
r-base >=4.2,<4.3.0a0
r-rcpp

Required By:

bioconductor-splicewiz

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-ompbam

and update with:

conda update bioconductor-ompbam

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-ompbam:<tag>

(see bioconductor-ompbam/tags for valid values for <tag>)

Download stats¶

Link to this page¶

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-ompbam/README.html)