recipe bioconductor-onlinefdr

Online error rate control

Homepage:

https://bioconductor.org/packages/3.18/bioc/html/onlineFDR.html

License:

GPL-3

Recipe:

/bioconductor-onlinefdr/meta.yaml

This package allows users to control the false discovery rate (FDR) or familywise error rate (FWER) for online multiple hypothesis testing, where hypotheses arrive in a stream. In this framework, a null hypothesis is rejected based on the evidence against it and on the previous rejection decisions.

package bioconductor-onlinefdr

versions:

2.10.0-0,  2.8.0-0,  2.6.0-2,  2.6.0-1,  2.6.0-0,  2.2.0-2,  2.2.0-1,  2.2.0-0,  2.0.0-0, 

2.10.0-0,  2.8.0-0,  2.6.0-2,  2.6.0-1,  2.6.0-0,  2.2.0-2,  2.2.0-1,  2.2.0-0,  2.0.0-0,  1.8.0-1,  1.8.0-0,  1.6.0-0,  1.4.0-0,  1.2.0-1,  1.2.0-0,  1.0.0-0

depends libblas:

>=3.9.0,<4.0a0

depends libgcc-ng:

>=12

depends liblapack:

>=3.9.0,<4.0a0

depends libstdcxx-ng:

>=12

depends r-base:

>=4.3,<4.4.0a0

depends r-progress:

depends r-rcpp:

depends r-rcppprogress:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-onlinefdr

and update with::

   mamba update bioconductor-onlinefdr

To create a new environment, run:

mamba create --name myenvname bioconductor-onlinefdr

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-onlinefdr:<tag>

(see `bioconductor-onlinefdr/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

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