recipe bioconductor-ontoproc

processing of ontologies of anatomy, cell lines, and so on

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/ontoProc.html

License:

Artistic-2.0

Recipe:

/bioconductor-ontoproc/meta.yaml

Support harvesting of diverse bioinformatic ontologies, making particular use of the ontologyIndex package on CRAN. We provide snapshots of key ontologies for terms about cells, cell lines, chemical compounds, and anatomy, to help analyze genome-scale experiments, particularly cell x compound screens. Another purpose is to strengthen development of compelling use cases for richer interfaces to emerging ontologies.

package bioconductor-ontoproc

Versions:

1.20.0-0,  1.16.0-0,  1.14.0-0,  1.12.0-1,  1.12.0-0,  1.10.0-0,  1.8.0-0,  1.6.0-1,  1.4.0-0

Depends:

• bioconductor-annotationhub >=3.6.0,<3.7.0

• bioconductor-biobase >=2.58.0,<2.59.0

• bioconductor-biocfilecache >=2.6.0,<2.7.0

• bioconductor-graph >=1.76.0,<1.77.0

• bioconductor-rgraphviz >=2.42.0,<2.43.0

• bioconductor-s4vectors >=0.36.0,<0.37.0

• bioconductor-summarizedexperiment >=1.28.0,<1.29.0

• r-base >=4.2,<4.3.0a0

• r-dplyr

• r-dt

• r-igraph

• r-magrittr

• r-ontologyindex

• r-ontologyplot

• r-shiny

Required By:

• bioconductor-pogos

• bioconductor-tenxplore

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-ontoproc

and update with:

conda update bioconductor-ontoproc

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-ontoproc:<tag>

(see bioconductor-ontoproc/tags for valid values for <tag>)

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