recipe bioconductor-ontoprocdata

A data package for ontoProc

Homepage:

https://bioconductor.org/packages/3.18/data/annotation/html/ontoProcData.html

License:

Artistic-2.0

Recipe:

/bioconductor-ontoprocdata/meta.yaml

This package manages rda files of multiple ontologies that are used in the ontoProc package. These ontologies were originally downloaded as owl or obo files and converted into Rda files. The files were downloaded at various times but most of them were downloaded on August 08 2022.

package bioconductor-ontoprocdata

versions:

0.99.9901-2,  0.99.9901-1,  0.99.9901-0,  0.99.9-1,  0.99.9-0

depends bioconductor-data-packages:

>=20231203

depends curl:

depends r-base:

>=4.3,<4.4.0a0

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-ontoprocdata

and update with::

   mamba update bioconductor-ontoprocdata

To create a new environment, run:

mamba create --name myenvname bioconductor-ontoprocdata

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-ontoprocdata:<tag>

(see `bioconductor-ontoprocdata/tags`_ for valid values for ``<tag>``)

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Link to this page

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