recipe bioconductor-opossom

Comprehensive analysis of transciptome data

Homepage

https://bioconductor.org/packages/3.11/bioc/html/oposSOM.html

License

GPL (>=2)

Recipe

/bioconductor-opossom/meta.yaml

This package translates microarray expression data into metadata of reduced dimension. It provides various sample-centered and group-centered visualizations, sample similarity analyses and functional enrichment analyses. The underlying SOM algorithm combines feature clustering, multidimensional scaling and dimension reduction, along with strong visualization capabilities. It enables extraction and description of functional expression modules inherent in the data.

package bioconductor-opossom

(downloads) docker_bioconductor-opossom

Versions

2.6.0-02.4.0-02.2.0-12.0.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-opossom

and update with:

conda update bioconductor-opossom

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-opossom:<tag>

(see bioconductor-opossom/tags for valid values for <tag>)