recipe bioconductor-orderedlist

Similarities of Ordered Gene Lists

Homepage:

https://bioconductor.org/packages/3.18/bioc/html/OrderedList.html

License:

GPL (>= 2)

Recipe:

/bioconductor-orderedlist/meta.yaml

Links:

biotools: orderedlist, doi: 10.1093/bioinformatics/btl385

Detection of similarities between ordered lists of genes. Thereby, either simple lists can be compared or gene expression data can be used to deduce the lists. Significance of similarities is evaluated by shuffling lists or by resampling in microarray data, respectively.

package bioconductor-orderedlist

(downloads) docker_bioconductor-orderedlist

versions:
1.78.0-0,  1.74.0-0,  1.72.0-0,  1.70.0-0,  1.66.0-0,  1.64.0-0,  1.62.0-1,  1.62.0-0,  1.59.1-0, 

1.78.0-0,  1.74.0-0,  1.72.0-0,  1.70.0-0,  1.66.0-0,  1.64.0-0,  1.62.0-1,  1.62.0-0,  1.59.1-0,  1.58.0-0,  1.56.0-1,  1.54.0-1,  1.54.0-0,  1.52.0-0,  1.50.0-0

depends bioconductor-biobase:

>=2.66.0,<2.67.0

depends bioconductor-twilight:

>=1.82.0,<1.83.0

depends r-base:

>=4.4,<4.5.0a0

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-orderedlist

and update with::

   mamba update bioconductor-orderedlist

To create a new environment, run:

mamba create --name myenvname bioconductor-orderedlist

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-orderedlist:<tag>

(see `bioconductor-orderedlist/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-orderedlist/README.html)