recipe bioconductor-orderedlist

Similarities of Ordered Gene Lists

Homepage

https://bioconductor.org/packages/3.14/bioc/html/OrderedList.html

License

GPL (>= 2)

Recipe

/bioconductor-orderedlist/meta.yaml

Links

biotools: orderedlist, doi: 10.1093/bioinformatics/btl385

Detection of similarities between ordered lists of genes. Thereby, either simple lists can be compared or gene expression data can be used to deduce the lists. Significance of similarities is evaluated by shuffling lists or by resampling in microarray data, respectively.

package bioconductor-orderedlist

Versions

1.66.0-0,  1.64.0-0,  1.62.0-1,  1.62.0-0,  1.59.1-0,  1.58.0-0,  1.56.0-1,  1.54.0-1,  1.54.0-0, 

1.66.0-0,  1.64.0-0,  1.62.0-1,  1.62.0-0,  1.59.1-0,  1.58.0-0,  1.56.0-1,  1.54.0-1,  1.54.0-0,  1.52.0-0,  1.50.0-0

Depends

• bioconductor-biobase >=2.54.0,<2.55.0

• bioconductor-twilight >=1.70.0,<1.71.0

• r-base >=4.1,<4.2.0a0

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-orderedlist

and update with:

conda update bioconductor-orderedlist

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-orderedlist:<tag>

(see bioconductor-orderedlist/tags for valid values for <tag>)

Download stats

Link to this page

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