- recipe bioconductor-orderedlist
Similarities of Ordered Gene Lists
- Homepage
https://bioconductor.org/packages/3.14/bioc/html/OrderedList.html
- License
GPL (>= 2)
- Recipe
- Links
biotools: orderedlist, doi: 10.1093/bioinformatics/btl385
Detection of similarities between ordered lists of genes. Thereby, either simple lists can be compared or gene expression data can be used to deduce the lists. Significance of similarities is evaluated by shuffling lists or by resampling in microarray data, respectively.
- package bioconductor-orderedlist¶
-
- Versions
1.66.0-0
,1.64.0-0
,1.62.0-1
,1.62.0-0
,1.59.1-0
,1.58.0-0
,1.56.0-1
,1.54.0-1
,1.54.0-0
,1.66.0-0
,1.64.0-0
,1.62.0-1
,1.62.0-0
,1.59.1-0
,1.58.0-0
,1.56.0-1
,1.54.0-1
,1.54.0-0
,1.52.0-0
,1.50.0-0
- Depends
bioconductor-biobase
>=2.54.0,<2.55.0
bioconductor-twilight
>=1.70.0,<1.71.0
r-base
>=4.1,<4.2.0a0
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-orderedlist
and update with:
conda update bioconductor-orderedlist
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-orderedlist:<tag>
(see bioconductor-orderedlist/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-orderedlist/README.html)