recipe bioconductor-organismdbi

Software to enable the smooth interfacing of different database packages

Homepage

https://bioconductor.org/packages/3.10/bioc/html/OrganismDbi.html

License

Artistic-2.0

Recipe

/bioconductor-organismdbi/meta.yaml

Links

biotools: organismdbi, doi: 10.1038/nmeth.3252

The package enables a simple unified interface to several annotation packages each of which has its own schema by taking advantage of the fact that each of these packages implements a select methods.

package bioconductor-organismdbi

Versions

1.28.0-0, 1.26.0-1, 1.24.0-0, 1.22.0-0, 1.20.0-0, 1.18.1-0, 1.14.1-0, 1.12.1-0, 1.12.0-0

Depends

• bioconductor-annotationdbi >=1.48.0,<1.49.0

• bioconductor-biobase >=2.46.0,<2.47.0

• bioconductor-biocgenerics >=0.32.0,<0.33.0

• bioconductor-genomicfeatures >=1.38.0,<1.39.0

• bioconductor-genomicranges >=1.38.0,<1.39.0

• bioconductor-graph >=1.64.0,<1.65.0

• bioconductor-iranges >=2.20.0,<2.21.0

• bioconductor-rbgl >=1.62.0,<1.63.0

• bioconductor-s4vectors >=0.24.0,<0.25.0

• r-base >=3.6,<3.7.0a0

• r-biocmanager

• r-dbi

Required By

• bioconductor-rattus.norvegicus

• bioconductor-mus.musculus

• bioconductor-gpart

• bioconductor-annotationhubdata

• bioconductor-epivizrdata

• bioconductor-homo.sapiens

• bioconductor-ggbio

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-organismdbi

and update with:

conda update bioconductor-organismdbi

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-organismdbi:<tag>

(see bioconductor-organismdbi/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-organismdbi/README.html)