recipe bioconductor-orthogene

Interspecies gene mapping

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/orthogene.html

License:

GPL-3

Recipe:

/bioconductor-orthogene/meta.yaml

`orthogene` is an R package for easy mapping of orthologous genes across hundreds of species. It pulls up-to-date gene ortholog mappings across **700+ organisms**. It also provides various utility functions to aggregate/expand common objects (e.g. data.frames, gene expression matrices, lists) using **1:1**, **many:1**, **1:many** or **many:many** gene mappings, both within- and between-species.

package bioconductor-orthogene

Versions:

1.4.0-0,  1.0.0-0

Depends:

• bioconductor-delayedarray >=0.24.0,<0.25.0

• bioconductor-ggtree >=3.6.0,<3.7.0

• r-babelgene

• r-base >=4.2,<4.3.0a0

• r-data.table

• r-dplyr

• r-ggplot2

• r-ggpubr

• r-gprofiler2

• r-grr

• r-homologene

• r-jsonlite

• r-matrix

• r-patchwork

• r-repmis

Required By:

• bioconductor-ewce

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-orthogene

and update with:

conda update bioconductor-orthogene

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-orthogene:<tag>

(see bioconductor-orthogene/tags for valid values for <tag>)

Download stats

Link to this page

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