recipe bioconductor-orthogene

Interspecies gene mapping

Homepage:

https://bioconductor.org/packages/3.14/bioc/html/orthogene.html

License:

GPL-3

Recipe:

/bioconductor-orthogene/meta.yaml

orthogene is an R package for easy mapping of orthologous genes across hundreds of species. It pulls up-to-date interspecies gene ortholog mappings across 700+ organisms. It also provides various utility functions to map common objects (e.g. data.frames, gene expression matrices, lists) onto 1:1 gene orthologs from any other species.

package bioconductor-orthogene

Versions:

1.0.0-0

Depends:

• bioconductor-delayedarray >=0.20.0,<0.21.0

• bioconductor-delayedmatrixstats >=1.16.0,<1.17.0

• bioconductor-genomeinfodbdata >=1.2.0,<1.3.0

• r-babelgene

• r-base >=4.1,<4.2.0a0

• r-data.table

• r-dplyr

• r-ggplot2

• r-ggpubr

• r-gprofiler2

• r-grr

• r-homologene

• r-jsonlite

• r-matrix

• r-matrix.utils

• r-patchwork

• r-repmis

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-orthogene

and update with:

conda update bioconductor-orthogene

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-orthogene:<tag>

(see bioconductor-orthogene/tags for valid values for <tag>)

Download stats

Link to this page

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