- recipe bioconductor-orthogene
Interspecies gene mapping
- Homepage:
https://bioconductor.org/packages/3.14/bioc/html/orthogene.html
- License:
GPL-3
- Recipe:
orthogene is an R package for easy mapping of orthologous genes across hundreds of species. It pulls up-to-date interspecies gene ortholog mappings across 700+ organisms. It also provides various utility functions to map common objects (e.g. data.frames, gene expression matrices, lists) onto 1:1 gene orthologs from any other species.
- package bioconductor-orthogene¶
-
- Versions:
1.0.0-0
- Depends:
bioconductor-delayedarray
>=0.20.0,<0.21.0
bioconductor-delayedmatrixstats
>=1.16.0,<1.17.0
bioconductor-genomeinfodbdata
>=1.2.0,<1.3.0
r-base
>=4.1,<4.2.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-orthogene
and update with:
conda update bioconductor-orthogene
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-orthogene:<tag>
(see bioconductor-orthogene/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-orthogene/README.html)