bioconductor-oscope

downloads

Oscope is a statistical pipeline developed to identifying and recovering the base cycle profiles of oscillating genes in an unsynchronized single cell RNA-seq experiment. The Oscope pipeline includes three modules: a sine model module to search for candidate oscillator pairs; a K-medoids clustering module to cluster candidate oscillators into groups; and an extended nearest insertion module to recover the base cycle order for each oscillator group.

Home http://bioconductor.org/packages/3.6/bioc/html/Oscope.html
Versions 1.6.0, 1.8.0
License Artistic-2.0
Recipe https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-oscope

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-oscope

and update with:

conda update bioconductor-oscope

docker

A Docker container is available at https://quay.io/repository/biocontainers/bioconductor-oscope.