recipe bioconductor-oveseg

OVESEG-test to detect tissue/cell-specific markers

Homepage

https://bioconductor.org/packages/3.10/bioc/html/OVESEG.html

License

GPL-2

Recipe

/bioconductor-oveseg/meta.yaml

An R package for multiple-group comparison to detect tissue/cell-specific marker genes among subtypes. It provides functions to compute OVESEG-test statistics, derive component weights in the mixture null distribution model and estimate p-values from weightedly aggregated permutations. Obtained posterior probabilities of component null hypotheses can also portrait all kinds of upregulation patterns among subtypes.

package bioconductor-oveseg

(downloads) docker_bioconductor-oveseg

Versions

1.2.0-0, 1.0.0-1

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-oveseg

and update with:

conda update bioconductor-oveseg

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-oveseg:<tag>

(see bioconductor-oveseg/tags for valid values for <tag>)