recipe bioconductor-padma

Individualized Multi-Omic Pathway Deviation Scores Using Multiple Factor Analysis

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/padma.html

License:

GPL (>=3)

Recipe:

/bioconductor-padma/meta.yaml

Use multiple factor analysis to calculate individualized pathway-centric scores of deviation with respect to the sampled population based on multi-omic assays (e.g., RNA-seq, copy number alterations, methylation, etc). Graphical and numerical outputs are provided to identify highly aberrant individuals for a particular pathway of interest, as well as the gene and omics drivers of aberrant multi-omic profiles.

package bioconductor-padma

(downloads) docker_bioconductor-padma

Versions:

1.8.0-01.4.0-01.2.0-01.0.0-21.0.0-1

Depends:
Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-padma

and update with:

conda update bioconductor-padma

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-padma:<tag>

(see bioconductor-padma/tags for valid values for <tag>)

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