recipe bioconductor-panomir

Detection of miRNAs that regulate interacting groups of pathways

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/PanomiR.html

License:

MIT + file LICENSE

Recipe:

/bioconductor-panomir/meta.yaml

PanomiR is a package to detect miRNAs that target groups of pathways from gene expression data. This package provides functionality for generating pathway activity profiles, determining differentially activated pathways between user-specified conditions, determining clusters of pathways via the PCxN package, and generating miRNAs targeting clusters of pathways. These function can be used separately or sequentially to analyze RNA-Seq data.

package bioconductor-panomir

Versions:

1.2.0-0

Depends:

• bioconductor-clusterprofiler >=4.6.0,<4.7.0

• bioconductor-gseabase >=1.60.0,<1.61.0

• bioconductor-limma >=3.54.0,<3.55.0

• bioconductor-org.hs.eg.db >=3.16.0,<3.17.0

• bioconductor-preprocesscore >=1.60.0,<1.61.0

• r-base >=4.2,<4.3.0a0

• r-dplyr

• r-forcats

• r-igraph

• r-metap

• r-rcolorbrewer

• r-rlang

• r-tibble

• r-withr

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-panomir

and update with:

conda update bioconductor-panomir

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-panomir:<tag>

(see bioconductor-panomir/tags for valid values for <tag>)

Download stats

Link to this page

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