bioconductor-panp

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A function to make gene presence/absence calls based on distance from negative strand matching probesets (NSMP) which are derived from Affymetrix annotation. PANP is applied after gene expression values are created, and therefore can be used after any preprocessing method such as MAS5 or GCRMA, or PM-only methods like RMA. NSMP sets have been established for the HGU133A and HGU133-Plus-2.0 chipsets to date.

Home http://bioconductor.org/packages/3.6/bioc/html/panp.html
Versions 1.46.0, 1.48.0
License GPL (>= 2)
Recipe https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-panp

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-panp

and update with:

conda update bioconductor-panp

docker

A Docker container is available at https://quay.io/repository/biocontainers/bioconductor-panp.