- recipe bioconductor-panp
Presence-Absence Calls from Negative Strand Matching Probesets
- Homepage
- License
GPL (>= 2)
- Recipe
- Links
biotools: panp, doi: 10.1109/BIBE.2007.4375552
A function to make gene presence/absence calls based on distance from negative strand matching probesets (NSMP) which are derived from Affymetrix annotation. PANP is applied after gene expression values are created, and therefore can be used after any preprocessing method such as MAS5 or GCRMA, or PM-only methods like RMA. NSMP sets have been established for the HGU133A and HGU133-Plus-2.0 chipsets to date.
- package bioconductor-panp¶
-
- Versions
1.64.0-0
,1.62.0-0
,1.60.0-1
,1.60.0-0
,1.58.0-0
,1.56.0-0
,1.54.0-1
,1.52.0-0
,1.50.0-0
,1.64.0-0
,1.62.0-0
,1.60.0-1
,1.60.0-0
,1.58.0-0
,1.56.0-0
,1.54.0-1
,1.52.0-0
,1.50.0-0
,1.48.0-0
,1.46.0-0
- Depends
bioconductor-affy
>=1.72.0,<1.73.0
bioconductor-biobase
>=2.54.0,<2.55.0
r-base
>=4.1,<4.2.0a0
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-panp
and update with:
conda update bioconductor-panp
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-panp:<tag>
(see bioconductor-panp/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-panp/README.html)