Data package with per-exon and per-gene read counts of RNA-seq samples of Pasilla knock-down by Brooks et al., Genome Research 2011.
This package provides per-exon and per-gene read counts computed for selected genes from RNA-seq data that were presented in the article “Conservation of an RNA regulatory map between Drosophila and mammals” by Brooks AN, Yang L, Duff MO, Hansen KD, Park JW, Dudoit S, Brenner SE, Graveley BR, Genome Res. 2011 Feb;21(2):193-202, Epub 2010 Oct 4, PMID: 20921232. The experiment studied the effect of RNAi knockdown of Pasilla, the Drosophila melanogaster ortholog of mammalian NOVA1 and NOVA2, on the transcriptome. The package vignette describes how the data provided here were derived from the RNA-Seq read sequence data that are provided by NCBI Gene Expression Omnibus under accession numbers GSM461176 to GSM461181.
- Required By
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-pasilla
and update with:
conda update bioconductor-pasilla
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-pasilla:<tag>
(see bioconductor-pasilla/tags for valid values for