recipe bioconductor-pasilla

Data package with per-exon and per-gene read counts of RNA-seq samples of Pasilla knock-down by Brooks et al., Genome Research 2011.

Homepage:

https://bioconductor.org/packages/3.16/data/experiment/html/pasilla.html

License:

LGPL

Recipe:

/bioconductor-pasilla/meta.yaml

This package provides per-exon and per-gene read counts computed for selected genes from RNA-seq data that were presented in the article "Conservation of an RNA regulatory map between Drosophila and mammals" by Brooks AN, Yang L, Duff MO, Hansen KD, Park JW, Dudoit S, Brenner SE, Graveley BR, Genome Res. 2011 Feb;21(2):193-202, Epub 2010 Oct 4, PMID: 20921232. The experiment studied the effect of RNAi knockdown of Pasilla, the Drosophila melanogaster ortholog of mammalian NOVA1 and NOVA2, on the transcriptome. The package vignette describes how the data provided here were derived from the RNA-Seq read sequence data that are provided by NCBI Gene Expression Omnibus under accession numbers GSM461176 to GSM461181.

package bioconductor-pasilla

(downloads) docker_bioconductor-pasilla

Versions:
1.26.0-0,  1.22.0-1,  1.22.0-0,  1.20.0-0,  1.18.1-0,  1.18.0-0,  1.17.0-0,  1.16.0-0,  1.14.0-0, 

1.26.0-0,  1.22.0-1,  1.22.0-0,  1.20.0-0,  1.18.1-0,  1.18.0-0,  1.17.0-0,  1.16.0-0,  1.14.0-0,  1.12.0-1,  1.12.0-0,  1.10.0-0

Depends:
Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-pasilla

and update with:

conda update bioconductor-pasilla

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-pasilla:<tag>

(see bioconductor-pasilla/tags for valid values for <tag>)

Download stats

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-pasilla/README.html)