recipe bioconductor-past

Pathway Association Study Tool (PAST)

Homepage

https://bioconductor.org/packages/3.11/bioc/html/PAST.html

License

GPL (>=3) + file LICENSE

Recipe

/bioconductor-past/meta.yaml

PAST takes GWAS output and assigns SNPs to genes, uses those genes to find pathways associated with the genes, and plots pathways based on significance. Implements methods for reading GWAS input data, finding genes associated with SNPs, calculating enrichment score and significance of pathways, and plotting pathways.

package bioconductor-past

(downloads) docker_bioconductor-past

Versions

1.4.1-0, 1.2.0-0, 1.0.0-1

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-past

and update with:

conda update bioconductor-past

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-past:<tag>

(see bioconductor-past/tags for valid values for <tag>)