recipe bioconductor-pathifier

Quantify deregulation of pathways in cancer

Homepage

https://bioconductor.org/packages/3.11/bioc/html/pathifier.html

License

Artistic-1.0

Recipe

/bioconductor-pathifier/meta.yaml

Links

biotools: pathifier, doi: 10.1073/pnas.1219651110

Pathifier is an algorithm that infers pathway deregulation scores for each tumor sample on the basis of expression data. This score is determined, in a context-specific manner, for every particular dataset and type of cancer that is being investigated. The algorithm transforms gene-level information into pathway-level information, generating a compact and biologically relevant representation of each sample.

package bioconductor-pathifier

(downloads) docker_bioconductor-pathifier

Versions

1.26.0-01.24.0-01.22.0-11.22.0-01.20.0-11.20.0-01.16.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-pathifier

and update with:

conda update bioconductor-pathifier

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-pathifier:<tag>

(see bioconductor-pathifier/tags for valid values for <tag>)