- recipe bioconductor-pathostat
PathoStat Statistical Microbiome Analysis Package
- Homepage:
https://bioconductor.org/packages/3.16/bioc/html/PathoStat.html
- License:
GPL (>= 2)
- Recipe:
- Links:
biotools: pathostat, doi: 10.1038/nmeth.3252
The purpose of this package is to perform Statistical Microbiome Analysis on metagenomics results from sequencing data samples. In particular, it supports analyses on the PathoScope generated report files. PathoStat provides various functionalities including Relative Abundance charts, Diversity estimates and plots, tests of Differential Abundance, Time Series visualization, and Core OTU analysis.
- package bioconductor-pathostat¶
-
- Versions:
1.24.0-0
,1.20.0-0
,1.18.0-0
,1.16.0-1
,1.16.0-0
,1.14.0-0
,1.12.0-0
,1.10.0-1
,1.8.4-0
,1.24.0-0
,1.20.0-0
,1.18.0-0
,1.16.0-1
,1.16.0-0
,1.14.0-0
,1.12.0-0
,1.10.0-1
,1.8.4-0
,1.6.1-0
,1.4.1-0
- Depends:
bioconductor-biocstyle
>=2.26.0,<2.27.0
bioconductor-complexheatmap
>=2.14.0,<2.15.0
bioconductor-deseq2
>=1.38.0,<1.39.0
bioconductor-edger
>=3.40.0,<3.41.0
bioconductor-limma
>=3.54.0,<3.55.0
bioconductor-phyloseq
>=1.42.0,<1.43.0
r-base
>=4.2,<4.3.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-pathostat
and update with:
conda update bioconductor-pathostat
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-pathostat:<tag>
(see bioconductor-pathostat/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-pathostat/README.html)