recipe bioconductor-pathvar

Methods to Find Pathways with Significantly Different Variability

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/pathVar.html

License:

LGPL (>= 2.0)

Recipe:

/bioconductor-pathvar/meta.yaml

Links:

biotools: pathvar, doi: 10.7717/peerj.3334

This package contains the functions to find the pathways that have significantly different variability than a reference gene set. It also finds the categories from this pathway that are significant where each category is a cluster of genes. The genes are separated into clusters by their level of variability.

package bioconductor-pathvar

Versions:

1.28.0-0,  1.24.0-0,  1.22.0-0,  1.20.0-1,  1.20.0-0,  1.18.0-0,  1.16.0-0,  1.14.0-1,  1.14.0-0, 

1.28.0-0,  1.24.0-0,  1.22.0-0,  1.20.0-1,  1.20.0-0,  1.18.0-0,  1.16.0-0,  1.14.0-1,  1.14.0-0,  1.12.0-0,  1.10.0-0,  1.8.0-0

Depends:

• r-base >=4.2,<4.3.0a0

• r-data.table

• r-emt

• r-ggplot2

• r-gridextra

• r-matching

• r-mclust

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-pathvar

and update with:

conda update bioconductor-pathvar

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-pathvar:<tag>

(see bioconductor-pathvar/tags for valid values for <tag>)

Download stats

Link to this page

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