recipe bioconductor-pathvar

Methods to Find Pathways with Significantly Different Variability

Homepage

https://bioconductor.org/packages/3.11/bioc/html/pathVar.html

License

LGPL (>= 2.0)

Recipe

/bioconductor-pathvar/meta.yaml

Links

biotools: pathvar, doi: 10.7717/peerj.3334

This package contains the functions to find the pathways that have significantly different variability than a reference gene set. It also finds the categories from this pathway that are significant where each category is a cluster of genes. The genes are separated into clusters by their level of variability.

package bioconductor-pathvar

(downloads) docker_bioconductor-pathvar

Versions

1.18.0-01.16.0-01.14.0-11.14.0-01.12.0-01.10.0-01.8.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-pathvar

and update with:

conda update bioconductor-pathvar

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-pathvar:<tag>

(see bioconductor-pathvar/tags for valid values for <tag>)