-
recipe
bioconductor-pathvar
Methods to Find Pathways with Significantly Different Variability
- Homepage
https://bioconductor.org/packages/3.12/bioc/html/pathVar.html
- License
LGPL (>= 2.0)
- Recipe
- Links
biotools: pathvar, doi: 10.7717/peerj.3334
This package contains the functions to find the pathways that have significantly different variability than a reference gene set. It also finds the categories from this pathway that are significant where each category is a cluster of genes. The genes are separated into clusters by their level of variability.
-
package
bioconductor-pathvar
¶ -
- Versions
1.20.0-0
,1.18.0-0
,1.16.0-0
,1.14.0-1
,1.14.0-0
,1.12.0-0
,1.10.0-0
,1.8.0-0
- Depends
r-base
>=4.0,<4.1.0a0
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-pathvar
and update with:
conda update bioconductor-pathvar
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-pathvar:<tag>
(see bioconductor-pathvar/tags for valid values for
<tag>
)
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-pathvar/README.html)