recipe bioconductor-pathvar

Methods to Find Pathways with Significantly Different Variability

Homepage

https://bioconductor.org/packages/3.12/bioc/html/pathVar.html

License

LGPL (>= 2.0)

Recipe

/bioconductor-pathvar/meta.yaml

Links

biotools: pathvar, doi: 10.7717/peerj.3334

This package contains the functions to find the pathways that have significantly different variability than a reference gene set. It also finds the categories from this pathway that are significant where each category is a cluster of genes. The genes are separated into clusters by their level of variability.

package bioconductor-pathvar

Versions

1.20.0-0,  1.18.0-0,  1.16.0-0,  1.14.0-1,  1.14.0-0,  1.12.0-0,  1.10.0-0,  1.8.0-0

Depends

• r-base >=4.0,<4.1.0a0

• r-data.table

• r-emt

• r-ggplot2

• r-gridextra

• r-matching

• r-mclust

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-pathvar

and update with:

conda update bioconductor-pathvar

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-pathvar:<tag>

(see bioconductor-pathvar/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-pathvar/README.html)