-
recipe
bioconductor-paxtoolsr
PaxtoolsR: Access Pathways from Multiple Databases through BioPAX and Pathway Commons
- Homepage
https://bioconductor.org/packages/3.12/bioc/html/paxtoolsr.html
- License
LGPL-3
- Recipe
The package provides a set of R functions for interacting with BioPAX OWL files using Paxtools and the querying Pathway Commons (PC) molecular interaction database that are hosted by the Computational Biology Center at Memorial Sloan-Kettering Cancer Center (MSKCC). Pathway Commons databases include: BIND, BioGRID, CORUM, CTD, DIP, DrugBank, HPRD, HumanCyc, IntAct, KEGG, MirTarBase, Panther, PhosphoSitePlus, Reactome, RECON, TRANSFAC.
-
package
bioconductor-paxtoolsr
¶ -
- Versions
1.24.0-0
,1.20.0-0
,1.18.0-1
,1.18.0-0
,1.16.0-0
- Depends
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-paxtoolsr
and update with:
conda update bioconductor-paxtoolsr
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-paxtoolsr:<tag>
(see bioconductor-paxtoolsr/tags for valid values for
<tag>
)
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-paxtoolsr/README.html)