recipe bioconductor-paxtoolsr

PaxtoolsR: Access Pathways from Multiple Databases through BioPAX and Pathway Commons

Homepage

https://bioconductor.org/packages/3.11/bioc/html/paxtoolsr.html

License

LGPL-3

Recipe

/bioconductor-paxtoolsr/meta.yaml

The package provides a set of R functions for interacting with BioPAX OWL files using Paxtools and the querying Pathway Commons (PC) molecular interaction database that are hosted by the Computational Biology Center at Memorial Sloan-Kettering Cancer Center (MSKCC). Pathway Commons databases include: BIND, BioGRID, CORUM, CTD, DIP, DrugBank, HPRD, HumanCyc, IntAct, KEGG, MirTarBase, Panther, PhosphoSitePlus, Reactome, RECON, TRANSFAC.

package bioconductor-paxtoolsr

(downloads) docker_bioconductor-paxtoolsr

Versions

1.20.0-01.18.0-11.18.0-01.16.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-paxtoolsr

and update with:

conda update bioconductor-paxtoolsr

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-paxtoolsr:<tag>

(see bioconductor-paxtoolsr/tags for valid values for <tag>)