recipe bioconductor-peakpanther

Peak Picking and Annotation of High Resolution Experiments

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/peakPantheR.html

License:

GPL-3

Recipe:

/bioconductor-peakpanther/meta.yaml

An automated pipeline for the detection, integration and reporting of predefined features across a large number of mass spectrometry data files. It enables the real time annotation of multiple compounds in a single file, or the parallel annotation of multiple compounds in multiple files. A graphical user interface as well as command line functions will assist in assessing the quality of annotation and update fitting parameters until a satisfactory result is obtained.

package bioconductor-peakpanther

Versions:

1.12.0-0,  1.8.0-0,  1.6.0-0,  1.4.0-1,  1.4.0-0,  1.2.0-0,  1.0.0-0

Depends:

• bioconductor-msnbase >=2.24.0,<2.25.0

• bioconductor-mzr >=2.32.0,<2.33.0

• r-base >=4.2,<4.3.0a0

• r-bslib

• r-doparallel >=1.0.11

• r-dt >=0.15

• r-foreach >=1.4.4

• r-ggplot2 >=3.3.0

• r-gridextra >=2.3

• r-minpack.lm >=1.2.1

• r-pracma >=2.2.3

• r-scales >=0.5.0

• r-shiny >=1.0.5

• r-shinycssloaders >=1.0.0

• r-stringr >=1.2.0

• r-xml >=3.98.1.10

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-peakpanther

and update with:

conda update bioconductor-peakpanther

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-peakpanther:<tag>

(see bioconductor-peakpanther/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-peakpanther/README.html)