- recipe bioconductor-peakpanther
Peak Picking and Annotation of High Resolution Experiments
- Homepage:
https://bioconductor.org/packages/3.16/bioc/html/peakPantheR.html
- License:
GPL-3
- Recipe:
An automated pipeline for the detection, integration and reporting of predefined features across a large number of mass spectrometry data files. It enables the real time annotation of multiple compounds in a single file, or the parallel annotation of multiple compounds in multiple files. A graphical user interface as well as command line functions will assist in assessing the quality of annotation and update fitting parameters until a satisfactory result is obtained.
- package bioconductor-peakpanther¶
-
- Versions:
1.12.0-0
,1.8.0-0
,1.6.0-0
,1.4.0-1
,1.4.0-0
,1.2.0-0
,1.0.0-0
- Depends:
bioconductor-msnbase
>=2.24.0,<2.25.0
bioconductor-mzr
>=2.32.0,<2.33.0
r-base
>=4.2,<4.3.0a0
r-doparallel
>=1.0.11
r-dt
>=0.15
r-foreach
>=1.4.4
r-ggplot2
>=3.3.0
r-gridextra
>=2.3
r-minpack.lm
>=1.2.1
r-pracma
>=2.2.3
r-scales
>=0.5.0
r-shiny
>=1.0.5
r-shinycssloaders
>=1.0.0
r-stringr
>=1.2.0
r-xml
>=3.98.1.10
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-peakpanther
and update with:
conda update bioconductor-peakpanther
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-peakpanther:<tag>
(see bioconductor-peakpanther/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-peakpanther/README.html)