recipe bioconductor-peca

Probe-level Expression Change Averaging

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/PECA.html

License:

GPL (>= 2)

Recipe:

/bioconductor-peca/meta.yaml

Links:

biotools: peca, doi: 10.1007/978-1-4939-6518-2_11

Calculates Probe-level Expression Change Averages (PECA) to identify differential expression in Affymetrix gene expression microarray studies or in proteomic studies using peptide-level mesurements respectively.

package bioconductor-peca

Versions:

1.34.0-0,  1.30.0-0,  1.28.0-0,  1.26.0-1,  1.26.0-0,  1.24.0-0,  1.22.0-0,  1.20.0-1,  1.18.0-0, 

1.34.0-0,  1.30.0-0,  1.28.0-0,  1.26.0-1,  1.26.0-0,  1.24.0-0,  1.22.0-0,  1.20.0-1,  1.18.0-0,  1.16.0-0,  1.14.0-0,  1.12.0-0

Depends:

• bioconductor-affy >=1.76.0,<1.77.0

• bioconductor-genefilter >=1.80.0,<1.81.0

• bioconductor-limma >=3.54.0,<3.55.0

• bioconductor-preprocesscore >=1.60.0,<1.61.0

• bioconductor-rots >=1.26.0,<1.27.0

• r-aroma.affymetrix

• r-aroma.core

• r-base >=4.2,<4.3.0a0

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-peca

and update with:

conda update bioconductor-peca

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-peca:<tag>

(see bioconductor-peca/tags for valid values for <tag>)

Download stats

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