recipe bioconductor-perfect

Permutation filtration for microbiome data

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/PERFect.html

License:

Artistic-2.0

Recipe:

/bioconductor-perfect/meta.yaml

PERFect is a novel permutation filtering approach designed to address two unsolved problems in microbiome data processing: (i) define and quantify loss due to filtering by implementing thresholds, and (ii) introduce and evaluate a permutation test for filtering loss to provide a measure of excessive filtering.

package bioconductor-perfect

Versions:

1.12.0-0,  1.8.0-0,  1.6.0-0,  1.4.0-1,  1.4.0-0,  1.2.0-0,  1.0.0-0

Depends:

• bioconductor-phyloseq >=1.42.0,<1.43.0

• r-base >=4.2,<4.3.0a0

• r-fitdistrplus >=1.0.12

• r-ggplot2 >=3.0.0

• r-matrix >=1.2.14

• r-psych >=1.8.4

• r-sn >=1.5.2

• r-zoo >=1.8.3

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-perfect

and update with:

conda update bioconductor-perfect

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-perfect:<tag>

(see bioconductor-perfect/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-perfect/README.html)