recipe bioconductor-phantasus

Visual and interactive gene expression analysis

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/phantasus.html

License:

MIT + file LICENSE

Recipe:

/bioconductor-phantasus/meta.yaml

Phantasus is a web-application for visual and interactive gene expression analysis. Phantasus is based on Morpheus – a web-based software for heatmap visualisation and analysis, which was integrated with an R environment via OpenCPU API. Aside from basic visualization and filtering methods, R-based methods such as k-means clustering, principal component analysis or differential expression analysis with limma package are supported.

package bioconductor-phantasus

Versions:

1.18.2-0,  1.14.0-0,  1.12.0-0,  1.10.0-1,  1.10.0-0,  1.8.0-0,  1.6.0-0,  1.4.0-1,  1.2.1-0

Depends:

• bioconductor-annotationdbi >=1.60.0,<1.61.0

• bioconductor-biobase >=2.58.0,<2.59.0

• bioconductor-deseq2 >=1.38.0,<1.39.0

• bioconductor-fgsea >=1.24.0,<1.25.0

• bioconductor-geoquery >=2.66.0,<2.67.0

• bioconductor-limma >=3.54.0,<3.55.0

• bioconductor-rhdf5 >=2.42.0,<2.43.0

• r-assertthat

• r-base >=4.2,<4.3.0a0

• r-ccapp

• r-curl

• r-data.table

• r-ggplot2

• r-gtable

• r-htmltools

• r-httpuv

• r-httr

• r-jsonlite

• r-matrix

• r-opencpu

• r-pheatmap

• r-protolite

• r-rook

• r-scales

• r-stringr

• r-svglite

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-phantasus

and update with:

conda update bioconductor-phantasus

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-phantasus:<tag>

(see bioconductor-phantasus/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-phantasus/README.html)