recipe bioconductor-phantasus

Phantasus is a web-application for visual and interactive gene expression analysis. Phantasus is based on Morpheus – a web-based software for heatmap visualisation and analysis, which was integrated with an R environment via OpenCPU API. Aside from basic visualization and filtering methods, R-based methods such as k-means clustering, principal component analysis or differential expression analysis with limma package are supported.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/phantasus.html

License

MIT + file LICENSE

Recipe

/bioconductor-phantasus/meta.yaml

package bioconductor-phantasus

(downloads) docker_bioconductor-phantasus

Versions

1.2.1-0

Depends bioconductor-biobase

>=2.42.0,<2.43.0

Depends bioconductor-fgsea

>=1.8.0,<1.9.0

Depends bioconductor-geoquery

>=2.50.0,<2.51.0

Depends bioconductor-limma

>=3.38.0,<3.39.0

Depends bioconductor-rhdf5

>=2.26.0,<2.27.0

Depends r-assertthat

Depends r-base

>=3.5.1,<3.5.2.0a0

Depends r-ccapp

Depends r-ggplot2

Depends r-gtable

Depends r-htmltools

Depends r-httpuv

Depends r-httr

Depends r-jsonlite

Depends r-matrix

Depends r-matrix.utils

Depends r-opencpu

Depends r-pheatmap

Depends r-protolite

Depends r-rook

Depends r-scales

Depends r-stringr

Depends r-svglite

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-phantasus

and update with:

conda update bioconductor-phantasus

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-phantasus:<tag>

(see bioconductor-phantasus/tags for valid values for <tag>)