recipe bioconductor-phantasus

Visual and interactive gene expression analysis






Phantasus is a web-application for visual and interactive gene expression analysis. Phantasus is based on Morpheus – a web-based software for heatmap visualisation and analysis, which was integrated with an R environment via OpenCPU API. Aside from basic visualization and filtering methods, R-based methods such as k-means clustering, principal component analysis or differential expression analysis with limma package are supported.

package bioconductor-phantasus

(downloads) docker_bioconductor-phantasus



depends bioconductor-annotationdbi:


depends bioconductor-biobase:


depends bioconductor-deseq2:


depends bioconductor-fgsea:


depends bioconductor-geoquery:


depends bioconductor-limma:


depends bioconductor-rhdf5:


depends r-assertthat:

depends r-base:


depends r-ccapp:

depends r-curl:

depends r-data.table:

depends r-ggplot2:

depends r-gtable:

depends r-htmltools:

depends r-httpuv:

depends r-httr:

depends r-jsonlite:

depends r-matrix:

depends r-opencpu:

depends r-pheatmap:

depends r-protolite:

depends r-rook:

depends r-scales:

depends r-stringr:

depends r-svglite:



You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-phantasus

and update with::

   mamba update bioconductor-phantasus

To create a new environment, run:

mamba create --name myenvname bioconductor-phantasus

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull<tag>

(see `bioconductor-phantasus/tags`_ for valid values for ``<tag>``)

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