-
recipe
bioconductor-phantasus¶ Phantasus is a web-application for visual and interactive gene expression analysis. Phantasus is based on Morpheus – a web-based software for heatmap visualisation and analysis, which was integrated with an R environment via OpenCPU API. Aside from basic visualization and filtering methods, R-based methods such as k-means clustering, principal component analysis or differential expression analysis with limma package are supported.
- Homepage
https://bioconductor.org/packages/3.9/bioc/html/phantasus.html
- License
MIT + file LICENSE
- Recipe
-
package
bioconductor-phantasus¶ 
- Versions
1.2.1-0
- Depends bioconductor-biobase
>=2.42.0,<2.43.0
- Depends bioconductor-fgsea
>=1.8.0,<1.9.0
- Depends bioconductor-geoquery
>=2.50.0,<2.51.0
- Depends bioconductor-limma
>=3.38.0,<3.39.0
- Depends bioconductor-rhdf5
>=2.26.0,<2.27.0
- Depends r-assertthat
- Depends r-base
>=3.5.1,<3.5.2.0a0
- Depends r-ccapp
- Depends r-ggplot2
- Depends r-gtable
- Depends r-htmltools
- Depends r-httpuv
- Depends r-httr
- Depends r-jsonlite
- Depends r-matrix
- Depends r-matrix.utils
- Depends r-opencpu
- Depends r-pheatmap
- Depends r-protolite
- Depends r-rook
- Depends r-scales
- Depends r-stringr
- Depends r-svglite
- Requirements
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-phantasus
and update with:
conda update bioconductor-phantasus
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-phantasus:<tag>
(see bioconductor-phantasus/tags for valid values for
<tag>)
Link to this page¶
Render an 
badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-phantasus/README.html)