recipe bioconductor-phantasus

Visual and interactive gene expression analysis

Homepage

https://bioconductor.org/packages/3.11/bioc/html/phantasus.html

License

MIT + file LICENSE

Recipe

/bioconductor-phantasus/meta.yaml

Phantasus is a web-application for visual and interactive gene expression analysis. Phantasus is based on Morpheus – a web-based software for heatmap visualisation and analysis, which was integrated with an R environment via OpenCPU API. Aside from basic visualization and filtering methods, R-based methods such as k-means clustering, principal component analysis or differential expression analysis with limma package are supported.

package bioconductor-phantasus

Versions

1.8.0-0, 1.6.0-0, 1.4.0-1, 1.2.1-0

Depends

• bioconductor-annotationdbi >=1.50.0,<1.51.0

• bioconductor-biobase >=2.48.0,<2.49.0

• bioconductor-deseq2 >=1.28.0,<1.29.0

• bioconductor-fgsea >=1.14.0,<1.15.0

• bioconductor-geoquery >=2.56.0,<2.57.0

• bioconductor-limma >=3.44.0,<3.45.0

• bioconductor-rhdf5 >=2.32.0,<2.33.0

• r-assertthat

• r-base >=4.0,<4.1.0a0

• r-ccapp

• r-ggplot2

• r-gtable

• r-htmltools

• r-httpuv

• r-httr

• r-jsonlite

• r-matrix

• r-opencpu

• r-pheatmap

• r-protolite

• r-rook

• r-scales

• r-stringr

• r-svglite

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-phantasus

and update with:

conda update bioconductor-phantasus

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-phantasus:<tag>

(see bioconductor-phantasus/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-phantasus/README.html)