- recipe bioconductor-phantasus
Visual and interactive gene expression analysis
- Homepage
https://bioconductor.org/packages/3.14/bioc/html/phantasus.html
- License
MIT + file LICENSE
- Recipe
Phantasus is a web-application for visual and interactive gene expression analysis. Phantasus is based on Morpheus – a web-based software for heatmap visualisation and analysis, which was integrated with an R environment via OpenCPU API. Aside from basic visualization and filtering methods, R-based methods such as k-means clustering, principal component analysis or differential expression analysis with limma package are supported.
- package bioconductor-phantasus¶
-
- Versions
1.14.0-0
,1.12.0-0
,1.10.0-1
,1.10.0-0
,1.8.0-0
,1.6.0-0
,1.4.0-1
,1.2.1-0
- Depends
bioconductor-annotationdbi
>=1.56.0,<1.57.0
bioconductor-biobase
>=2.54.0,<2.55.0
bioconductor-deseq2
>=1.34.0,<1.35.0
bioconductor-fgsea
>=1.20.0,<1.21.0
bioconductor-geoquery
>=2.62.0,<2.63.0
bioconductor-limma
>=3.50.0,<3.51.0
bioconductor-rhdf5
>=2.38.0,<2.39.0
r-base
>=4.1,<4.2.0a0
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-phantasus
and update with:
conda update bioconductor-phantasus
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-phantasus:<tag>
(see bioconductor-phantasus/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-phantasus/README.html)