recipe bioconductor-pharmacogx

Analysis of Large-Scale Pharmacogenomic Data

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/PharmacoGx.html

License:

GPL (>= 3)

Recipe:

/bioconductor-pharmacogx/meta.yaml

Contains a set of functions to perform large-scale analysis of pharmaco-genomic data. These include the PharmacoSet object for storing the results of pharmacogenomic experiments, as well as a number of functions for computing common summaries of drug-dose response and correlating them with the molecular features in a cancer cell-line.

package bioconductor-pharmacogx

Versions:

3.2.0-0,  2.6.0-0,  2.4.0-0,  2.2.4-0,  2.2.0-0,  2.0.0-0,  1.16.0-0,  1.14.1-0,  1.12.0-0

Depends:

• bioconductor-biobase >=2.58.0,<2.59.0

• bioconductor-biocgenerics >=0.44.0,<0.45.0

• bioconductor-biocparallel >=1.32.0,<1.33.0

• bioconductor-coregx >=2.2.0,<2.3.0

• bioconductor-multiassayexperiment >=1.24.0,<1.25.0

• bioconductor-s4vectors >=0.36.0,<0.37.0

• bioconductor-summarizedexperiment >=1.28.0,<1.29.0

• libblas >=3.9.0,<4.0a0

• libgcc-ng >=12

• liblapack >=3.9.0,<4.0a0

• libstdcxx-ng >=12

• r-base >=4.2,<4.3.0a0

• r-boot

• r-catools

• r-checkmate

• r-coop

• r-data.table

• r-downloader

• r-ggplot2

• r-jsonlite

• r-magicaxis

• r-rcolorbrewer

• r-rcpp

• r-reshape2

Required By:

• bioconductor-xeva

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-pharmacogx

and update with:

conda update bioconductor-pharmacogx

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-pharmacogx:<tag>

(see bioconductor-pharmacogx/tags for valid values for <tag>)

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