- recipe bioconductor-pharmacogx
Analysis of Large-Scale Pharmacogenomic Data
- Homepage
https://bioconductor.org/packages/3.14/bioc/html/PharmacoGx.html
- License
Artistic-2.0
- Recipe
Contains a set of functions to perform large-scale analysis of pharmaco-genomic data. These include the PharmacoSet object for storing the results of pharmacogenomic experiments, as well as a number of functions for computing common summaries of drug-dose response and correlating them with the molecular features in a cancer cell-line.
- package bioconductor-pharmacogx¶
-
- Versions
2.6.0-0
,2.4.0-0
,2.2.4-0
,2.2.0-0
,2.0.0-0
,1.16.0-0
,1.14.1-0
,1.12.0-0
- Depends
bioconductor-biobase
>=2.54.0,<2.55.0
bioconductor-biocgenerics
>=0.40.0,<0.41.0
bioconductor-biocparallel
>=1.28.0,<1.29.0
bioconductor-coregx
>=1.6.0,<1.7.0
bioconductor-multiassayexperiment
>=1.20.0,<1.21.0
bioconductor-s4vectors
>=0.32.0,<0.33.0
bioconductor-summarizedexperiment
>=1.24.0,<1.25.0
r-base
>=4.1,<4.2.0a0
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-pharmacogx
and update with:
conda update bioconductor-pharmacogx
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-pharmacogx:<tag>
(see bioconductor-pharmacogx/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-pharmacogx/README.html)