recipe bioconductor-pharmacogx

Analysis of Large-Scale Pharmacogenomic Data

Homepage

https://bioconductor.org/packages/3.11/bioc/html/PharmacoGx.html

License

Artistic-2.0

Recipe

/bioconductor-pharmacogx/meta.yaml

Contains a set of functions to perform large-scale analysis of pharmacogenomic data.

package bioconductor-pharmacogx

Versions

2.0.0-0,  1.16.0-0,  1.14.1-0,  1.12.0-0

Depends

• bioconductor-biobase >=2.48.0,<2.49.0

• bioconductor-biocparallel >=1.22.0,<1.23.0

• bioconductor-coregx >=1.0.0,<1.1.0

• bioconductor-s4vectors >=0.26.0,<0.27.0

• bioconductor-summarizedexperiment >=1.18.0,<1.19.0

• r-base >=4.0,<4.1.0a0

• r-catools

• r-downloader

• r-ggplot2

• r-jsonlite

• r-magicaxis

• r-rcolorbrewer

• r-reshape2

• r-testthat

Required By

• bioconductor-xeva

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-pharmacogx

and update with:

conda update bioconductor-pharmacogx

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-pharmacogx:<tag>

(see bioconductor-pharmacogx/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-pharmacogx/README.html)