recipe bioconductor-phenotest

Tools to test association between gene expression and phenotype in a way that is efficient, structured, fast and scalable. We also provide tools to do GSEA (Gene set enrichment analysis) and copy number variation.

Homepage

https://bioconductor.org/packages/3.10/bioc/html/phenoTest.html

License

GPL (>=2)

Recipe

/bioconductor-phenotest/meta.yaml

Tools to test correlation between gene expression and phenotype in a way that is efficient, structured, fast and scalable. GSEA is also provided.

package bioconductor-phenotest

Versions

1.34.0-0, 1.32.0-1, 1.30.0-0

Depends

• bioconductor-annotate >=1.64.0,<1.65.0

• bioconductor-annotationdbi >=1.48.0,<1.49.0

• bioconductor-biobase >=2.46.0,<2.47.0

• bioconductor-biomart >=2.42.0,<2.43.0

• bioconductor-category >=2.52.0,<2.53.0

• bioconductor-genefilter >=1.68.0,<1.69.0

• bioconductor-gseabase >=1.48.0,<1.49.0

• bioconductor-heatplus >=2.32.0,<2.33.0

• bioconductor-hgu133a.db >=3.2.0,<3.3.0

• bioconductor-hopach >=2.46.0,<2.47.0

• bioconductor-htsanalyzer >=2.38.0,<2.39.0

• bioconductor-limma >=3.42.0,<3.43.0

• bioconductor-snpchip >=2.32.0,<2.33.0

• r-base >=3.6,<3.7.0a0

• r-bma

• r-ellipse

• r-ggplot2

• r-gplots

• r-hmisc

• r-mgcv

• r-survival

• r-xtable

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-phenotest

and update with:

conda update bioconductor-phenotest

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-phenotest:<tag>

(see bioconductor-phenotest/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-phenotest/README.html)