bioconductor-philr

downloads

PhILR is short for Phylogenetic Isometric Log-Ratio Transform. This package provides functions for the analysis of compositional data (e.g., data representing proportions of different variables/parts). Specifically this package allows analysis of compositional data where the parts can be related through a phylogenetic tree (as is common in microbiota survey data) and makes available the Isometric Log Ratio transform built from the phylogenetic tree and utilizing a weighted reference measure.

Home http://bioconductor.org/packages/3.7/bioc/html/philr.html
Versions 1.6.0, 1.4.0
License GPL-3
Recipe https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-philr
Links biotools: philr

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-philr

and update with:

conda update bioconductor-philr

docker

A Docker container is available at https://quay.io/repository/biocontainers/bioconductor-philr.