recipe bioconductor-phosphonormalizer

Compensates for the bias introduced by median normalization in phosphoproteomics

Homepage

https://bioconductor.org/packages/3.11/bioc/html/phosphonormalizer.html

License

GPL (>= 2)

Recipe

/bioconductor-phosphonormalizer/meta.yaml

It uses the overlap between enriched and non-enriched datasets to compensate for the bias introduced in global phosphorylation after applying median normalization.

package bioconductor-phosphonormalizer

(downloads) docker_bioconductor-phosphonormalizer

Versions

1.12.0-01.10.0-01.8.0-11.8.0-01.6.0-01.4.0-01.2.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-phosphonormalizer

and update with:

conda update bioconductor-phosphonormalizer

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-phosphonormalizer:<tag>

(see bioconductor-phosphonormalizer/tags for valid values for <tag>)