recipe bioconductor-phyloprofile

PhyloProfile

Homepage

https://bioconductor.org/packages/3.11/bioc/html/PhyloProfile.html

License

MIT + file LICENSE

Recipe

/bioconductor-phyloprofile/meta.yaml

PhyloProfile is a tool for exploring complex phylogenetic profiles. Phylogenetic profiles, presence/absence patterns of genes over a set of species, are commonly used to trace the functional and evolutionary history of genes across species and time. With PhyloProfile we can enrich regular phylogenetic profiles with further data like sequence/structure similarity, to make phylogenetic profiling more meaningful. Besides the interactive visualisation powered by R-Shiny, the package offers a set of further analysis features to gain insights like the gene age estimation or core gene identification.

package bioconductor-phyloprofile

(downloads) docker_bioconductor-phyloprofile

Versions

1.2.2-01.0.1-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-phyloprofile

and update with:

conda update bioconductor-phyloprofile

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-phyloprofile:<tag>

(see bioconductor-phyloprofile/tags for valid values for <tag>)