recipe bioconductor-pi

Leveraging Genetic Evidence to Prioritise Drug Targets at the Gene and Pathway Level

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/Pi.html

License:

GPL-3

Recipe:

/bioconductor-pi/meta.yaml

Priority index or Pi is developed as a genomic-led target prioritisation system. It integrates functional genomic predictors, knowledge of network connectivity and immune ontologies to prioritise potential drug targets at the gene and pathway level.

package bioconductor-pi

Versions:

2.10.0-0,  2.6.0-0,  2.4.0-0,  2.2.0-0,  2.0.0-0,  1.14.0-0,  1.12.0-1,  1.10.0-0

Depends:

• bioconductor-biocgenerics >=0.44.0,<0.45.0

• bioconductor-genomeinfodb >=1.34.0,<1.35.0

• bioconductor-genomicranges >=1.50.0,<1.51.0

• bioconductor-iranges >=2.32.0,<2.33.0

• bioconductor-suprahex >=1.36.0,<1.37.0

• r-base >=4.2,<4.3.0a0

• r-caret

• r-dnet

• r-dplyr

• r-ggnetwork

• r-ggplot2

• r-ggrepel

• r-glmnet

• r-igraph

• r-lattice

• r-mass

• r-matrix

• r-osfr

• r-plot3d

• r-purrr

• r-randomforest

• r-rcircos

• r-readr

• r-rocr

• r-scales

• r-tibble

• r-tidyr

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-pi

and update with:

conda update bioconductor-pi

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-pi:<tag>

(see bioconductor-pi/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

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