recipe bioconductor-planet

Placental DNA methylation analysis tools






This package contains R functions to infer additional biological variables to supplemental DNA methylation analysis of placental data. This includes inferring ethnicity/ancestry, gestational age, and cell composition from placental DNA methylation array (450k/850k) data. The package comes with an example processed placental dataset.

package bioconductor-planet

(downloads) docker_bioconductor-planet



depends r-base:


depends r-dplyr:

depends r-magrittr:

depends r-tibble:



You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-planet

and update with::

   mamba update bioconductor-planet

To create a new environment, run:

mamba create --name myenvname bioconductor-planet

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull<tag>

(see `bioconductor-planet/tags`_ for valid values for ``<tag>``)

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