recipe bioconductor-plgem

Detect differential expression in microarray and proteomics datasets with the Power Law Global Error Model (PLGEM)

Homepage

https://bioconductor.org/packages/3.11/bioc/html/plgem.html

License

GPL-2

Recipe

/bioconductor-plgem/meta.yaml

Links

biotools: plgem

The Power Law Global Error Model (PLGEM) has been shown to faithfully model the variance-versus-mean dependence that exists in a variety of genome-wide datasets, including microarray and proteomics data. The use of PLGEM has been shown to improve the detection of differentially expressed genes or proteins in these datasets.

package bioconductor-plgem

Versions

1.60.0-0, 1.58.0-0, 1.56.0-1, 1.54.1-0, 1.54.0-0, 1.52.0-0, 1.50.0-0, 1.48.0-0

Depends

• bioconductor-biobase >=2.48.0,<2.49.0

• r-base >=4.0,<4.1.0a0

• r-mass

Required By

• bioconductor-inspect

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-plgem

and update with:

conda update bioconductor-plgem

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-plgem:<tag>

(see bioconductor-plgem/tags for valid values for <tag>)

Link to this page

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