recipe bioconductor-plier

Implements the Affymetrix PLIER algorithm

Homepage

https://bioconductor.org/packages/3.14/bioc/html/plier.html

License

GPL (>= 2)

Recipe

/bioconductor-plier/meta.yaml

Links

biotools: plier, doi: 10.1038/nmeth.3252

The PLIER (Probe Logarithmic Error Intensity Estimate) method produces an improved signal by accounting for experimentally observed patterns in probe behavior and handling error at the appropriately at low and high signal values.

package bioconductor-plier

Versions

1.64.0-1,  1.64.0-0,  1.62.0-0,  1.60.0-1,  1.60.0-0,  1.58.0-0,  1.56.0-0,  1.54.0-1,  1.52.0-0, 

1.64.0-1,  1.64.0-0,  1.62.0-0,  1.60.0-1,  1.60.0-0,  1.58.0-0,  1.56.0-0,  1.54.0-1,  1.52.0-0,  1.50.0-0,  1.48.0-0,  1.46.0-0

Depends

• bioconductor-affy >=1.72.0,<1.73.0

• bioconductor-biobase >=2.54.0,<2.55.0

• libblas >=3.8.0,<4.0a0

• libgcc-ng >=10.3.0

• liblapack >=3.8.0,<4.0a0

• libstdcxx-ng >=10.3.0

• r-base >=4.1,<4.2.0a0

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-plier

and update with:

conda update bioconductor-plier

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-plier:<tag>

(see bioconductor-plier/tags for valid values for <tag>)

Download stats

Link to this page

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