- recipe bioconductor-plier
Implements the Affymetrix PLIER algorithm
- Homepage
- License
GPL (>= 2)
- Recipe
- Links
biotools: plier, doi: 10.1038/nmeth.3252
The PLIER (Probe Logarithmic Error Intensity Estimate) method produces an improved signal by accounting for experimentally observed patterns in probe behavior and handling error at the appropriately at low and high signal values.
- package bioconductor-plier¶
-
- Versions
1.64.0-1
,1.64.0-0
,1.62.0-0
,1.60.0-1
,1.60.0-0
,1.58.0-0
,1.56.0-0
,1.54.0-1
,1.52.0-0
,1.64.0-1
,1.64.0-0
,1.62.0-0
,1.60.0-1
,1.60.0-0
,1.58.0-0
,1.56.0-0
,1.54.0-1
,1.52.0-0
,1.50.0-0
,1.48.0-0
,1.46.0-0
- Depends
bioconductor-affy
>=1.72.0,<1.73.0
bioconductor-biobase
>=2.54.0,<2.55.0
libblas
>=3.8.0,<4.0a0
libgcc-ng
>=10.3.0
liblapack
>=3.8.0,<4.0a0
libstdcxx-ng
>=10.3.0
r-base
>=4.1,<4.2.0a0
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-plier
and update with:
conda update bioconductor-plier
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-plier:<tag>
(see bioconductor-plier/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-plier/README.html)