recipe bioconductor-plyinteractions

Extending tidy verbs to genomic interactions

Homepage:

https://bioconductor.org/packages/3.18/bioc/html/plyinteractions.html

License:

Artistic-2.0

Recipe:

/bioconductor-plyinteractions/meta.yaml

Operate on `GInteractions` objects as tabular data using `dplyr`-like verbs. The functions and methods in `plyinteractions` provide a grammatical approach to manipulate `GInteractions`, to facilitate their integration in genomic analysis workflows.

package bioconductor-plyinteractions

versions:

1.0.0-0

depends bioconductor-biocgenerics:

>=0.48.0,<0.49.0

depends bioconductor-genomeinfodb:

>=1.38.0,<1.39.0

depends bioconductor-genomicranges:

>=1.54.0,<1.55.0

depends bioconductor-interactionset:

>=1.30.0,<1.31.0

depends bioconductor-iranges:

>=2.36.0,<2.37.0

depends bioconductor-plyranges:

>=1.22.0,<1.23.0

depends bioconductor-s4vectors:

>=0.40.0,<0.41.0

depends r-base:

>=4.3,<4.4.0a0

depends r-dplyr:

depends r-rlang:

depends r-tibble:

depends r-tidyselect:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-plyinteractions

and update with::

   mamba update bioconductor-plyinteractions

To create a new environment, run:

mamba create --name myenvname bioconductor-plyinteractions

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-plyinteractions:<tag>

(see `bioconductor-plyinteractions/tags`_ for valid values for ``<tag>``)

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