recipe bioconductor-pram

Pooling RNA-seq datasets for assembling transcript models

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/pram.html

License:

GPL (>= 3)

Recipe:

/bioconductor-pram/meta.yaml

Publicly available RNA-seq data is routinely used for retrospective analysis to elucidate new biology. Novel transcript discovery enabled by large collections of RNA-seq datasets has emerged as one of such analysis. To increase the power of transcript discovery from large collections of RNA-seq datasets, we developed a new R package named Pooling RNA-seq and Assembling Models (PRAM), which builds transcript models in intergenic regions from pooled RNA-seq datasets. This package includes functions for defining intergenic regions, extracting and pooling related RNA-seq alignments, predicting, selected, and evaluating transcript models.

package bioconductor-pram

(downloads) docker_bioconductor-pram

Versions:

1.14.0-01.10.0-01.8.0-01.6.0-11.6.0-01.4.0-01.2.0-01.0.0-1

Depends:
Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-pram

and update with:

conda update bioconductor-pram

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-pram:<tag>

(see bioconductor-pram/tags for valid values for <tag>)

Download stats