bioconductor-prebs

downloads

The prebs package aims at making RNA-sequencing (RNA-seq) data more comparable to microarray data. The comparability is achieved by summarizing sequencing-based expressions of probe regions using a modified version of RMA algorithm. The pipeline takes mapped reads in BAM format as an input and produces either gene expressions or original microarray probe set expressions as an output.

Home http://bioconductor.org/packages/3.7/bioc/html/prebs.html
Versions 1.20.0, 1.18.0
License Artistic-2.0
Recipe https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-prebs
Links biotools: prebs

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-prebs

and update with:

conda update bioconductor-prebs

docker

A Docker container is available at https://quay.io/repository/biocontainers/bioconductor-prebs.