recipe bioconductor-primirtss

Prediction of pri-miRNA Transcription Start Site

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/primirTSS.html

License:

GPL-2

Recipe:

/bioconductor-primirtss/meta.yaml

A fast, convenient tool to identify the TSSs of miRNAs by integrating the data of H3K4me3 and Pol II as well as combining the conservation level and sequence feature, provided within both command-line and graphical interfaces, which achieves a better performance than the previous non-cell-specific methods on miRNA TSSs.

package bioconductor-primirtss

Versions:

1.16.0-0,  1.12.0-0,  1.10.0-0,  1.8.0-1,  1.8.0-0,  1.6.0-0,  1.4.0-1,  1.2.0-1,  1.0.1-0

Depends:

• bioconductor-biocgenerics >=0.44.0,<0.45.0

• bioconductor-biostrings >=2.66.0,<2.67.0

• bioconductor-bsgenome.hsapiens.ucsc.hg38 >=1.4.0,<1.5.0

• bioconductor-genomicranges >=1.50.0,<1.51.0

• bioconductor-genomicscores >=2.10.0,<2.11.0

• bioconductor-gviz >=1.42.0,<1.43.0

• bioconductor-iranges >=2.32.0,<2.33.0

• bioconductor-jaspar2018 >=1.1.0,<1.2.0

• bioconductor-phastcons100way.ucsc.hg38 >=3.7.0,<3.8.0

• bioconductor-rtracklayer >=1.58.0,<1.59.0

• bioconductor-s4vectors >=0.36.0,<0.37.0

• bioconductor-tfbstools >=1.36.0,<1.37.0

• r-base >=4.2,<4.3.0a0

• r-dplyr >=0.7.6

• r-purrr >=0.2.5

• r-r.utils >=2.6.0

• r-shiny >=1.0.5

• r-stringr >=1.3.1

• r-tibble >=1.4.2

• r-tidyr >=0.8.1

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-primirtss

and update with:

conda update bioconductor-primirtss

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-primirtss:<tag>

(see bioconductor-primirtss/tags for valid values for <tag>)

Download stats

Link to this page

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