- recipe bioconductor-primirtss
Prediction of pri-miRNA Transcription Start Site
- Homepage:
https://bioconductor.org/packages/3.16/bioc/html/primirTSS.html
- License:
GPL-2
- Recipe:
A fast, convenient tool to identify the TSSs of miRNAs by integrating the data of H3K4me3 and Pol II as well as combining the conservation level and sequence feature, provided within both command-line and graphical interfaces, which achieves a better performance than the previous non-cell-specific methods on miRNA TSSs.
- package bioconductor-primirtss¶
-
- Versions:
1.16.0-0
,1.12.0-0
,1.10.0-0
,1.8.0-1
,1.8.0-0
,1.6.0-0
,1.4.0-1
,1.2.0-1
,1.0.1-0
- Depends:
bioconductor-biocgenerics
>=0.44.0,<0.45.0
bioconductor-biostrings
>=2.66.0,<2.67.0
bioconductor-bsgenome.hsapiens.ucsc.hg38
>=1.4.0,<1.5.0
bioconductor-genomicranges
>=1.50.0,<1.51.0
bioconductor-genomicscores
>=2.10.0,<2.11.0
bioconductor-gviz
>=1.42.0,<1.43.0
bioconductor-iranges
>=2.32.0,<2.33.0
bioconductor-jaspar2018
>=1.1.0,<1.2.0
bioconductor-phastcons100way.ucsc.hg38
>=3.7.0,<3.8.0
bioconductor-rtracklayer
>=1.58.0,<1.59.0
bioconductor-s4vectors
>=0.36.0,<0.37.0
bioconductor-tfbstools
>=1.36.0,<1.37.0
r-base
>=4.2,<4.3.0a0
r-dplyr
>=0.7.6
r-purrr
>=0.2.5
r-r.utils
>=2.6.0
r-shiny
>=1.0.5
r-stringr
>=1.3.1
r-tibble
>=1.4.2
r-tidyr
>=0.8.1
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-primirtss
and update with:
conda update bioconductor-primirtss
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-primirtss:<tag>
(see bioconductor-primirtss/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-primirtss/README.html)