- recipe bioconductor-proteodisco
Generation of customized protein variant databases from genomic variants, splice-junctions and manual sequences
- Homepage:
https://bioconductor.org/packages/3.16/bioc/html/ProteoDisco.html
- License:
GPL-3
- Recipe:
ProteoDisco is an R package to facilitate proteogenomics studies. It houses functions to create customized (variant) protein databases based on user-submitted genomic variants, splice-junctions, fusion genes and manual transcript sequences. The flexible workflow can be adopted to suit a myriad of research and experimental settings.
- package bioconductor-proteodisco¶
-
- Versions:
1.4.0-0
,1.0.0-0
- Depends:
bioconductor-biocgenerics
>=0.44.0,<0.45.0
bioconductor-biocparallel
>=1.32.0,<1.33.0
bioconductor-biostrings
>=2.66.0,<2.67.0
bioconductor-cleaver
>=1.36.0,<1.37.0
bioconductor-genomeinfodb
>=1.34.0,<1.35.0
bioconductor-genomicfeatures
>=1.50.0,<1.51.0
bioconductor-genomicranges
>=1.50.0,<1.51.0
bioconductor-iranges
>=2.32.0,<2.33.0
bioconductor-s4vectors
>=0.36.0,<0.37.0
bioconductor-variantannotation
>=1.44.0,<1.45.0
bioconductor-xvector
>=0.38.0,<0.39.0
r-base
>=4.2,<4.3.0a0
r-checkmate
>=2.0.0
r-dplyr
>=1.0.6
r-parallellogger
>=2.0.1
r-plyr
>=1.8.6
r-rlang
>=0.4.11
r-tibble
>=3.1.2
r-tidyr
>=1.1.3
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-proteodisco
and update with:
conda update bioconductor-proteodisco
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-proteodisco:<tag>
(see bioconductor-proteodisco/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-proteodisco/README.html)