recipe bioconductor-proteodisco

Generation of customized protein variant databases from genomic variants, splice-junctions and manual sequences

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/ProteoDisco.html

License:

GPL-3

Recipe:

/bioconductor-proteodisco/meta.yaml

ProteoDisco is an R package to facilitate proteogenomics studies. It houses functions to create customized (variant) protein databases based on user-submitted genomic variants, splice-junctions, fusion genes and manual transcript sequences. The flexible workflow can be adopted to suit a myriad of research and experimental settings.

package bioconductor-proteodisco

Versions:

1.4.0-0,  1.0.0-0

Depends:

• bioconductor-biocgenerics >=0.44.0,<0.45.0

• bioconductor-biocparallel >=1.32.0,<1.33.0

• bioconductor-biostrings >=2.66.0,<2.67.0

• bioconductor-cleaver >=1.36.0,<1.37.0

• bioconductor-genomeinfodb >=1.34.0,<1.35.0

• bioconductor-genomicfeatures >=1.50.0,<1.51.0

• bioconductor-genomicranges >=1.50.0,<1.51.0

• bioconductor-iranges >=2.32.0,<2.33.0

• bioconductor-s4vectors >=0.36.0,<0.37.0

• bioconductor-variantannotation >=1.44.0,<1.45.0

• bioconductor-xvector >=0.38.0,<0.39.0

• r-base >=4.2,<4.3.0a0

• r-checkmate >=2.0.0

• r-dplyr >=1.0.6

• r-parallellogger >=2.0.1

• r-plyr >=1.8.6

• r-rlang >=0.4.11

• r-tibble >=3.1.2

• r-tidyr >=1.1.3

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-proteodisco

and update with:

conda update bioconductor-proteodisco

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-proteodisco:<tag>

(see bioconductor-proteodisco/tags for valid values for <tag>)

Download stats

Link to this page

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