recipe bioconductor-psmatch

Handling and Managing Peptide Spectrum Matches

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/PSMatch.html

License:

Artistic-2.0

Recipe:

/bioconductor-psmatch/meta.yaml

The PSMatch package helps proteomics practitioners to load, handle and manage Peptide Spectrum Matches. It provides functions to model peptide-protein relations as adjacency matrices and connected components, visualise these as graphs and make informed decision about shared peptide filtering. The package also provides functions to calculate and visualise MS2 fragment ions.

package bioconductor-psmatch

Versions:

1.2.0-0

Depends:

• bioconductor-biocgenerics >=0.44.0,<0.45.0

• bioconductor-biocparallel >=1.32.0,<1.33.0

• bioconductor-mscoreutils >=1.10.0,<1.11.0

• bioconductor-protgenerics >=1.30.0,<1.31.0

• bioconductor-qfeatures >=1.8.0,<1.9.0

• bioconductor-s4vectors >=0.36.0,<0.37.0

• r-base >=4.2,<4.3.0a0

• r-igraph

• r-matrix

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-psmatch

and update with:

conda update bioconductor-psmatch

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-psmatch:<tag>

(see bioconductor-psmatch/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

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