recipe bioconductor-psygenet2r

psygenet2r - An R package for querying PsyGeNET and to perform comorbidity studies in psychiatric disorders

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/psygenet2r.html

License:

MIT + file LICENSE

Recipe:

/bioconductor-psygenet2r/meta.yaml

Links:

biotools: psygenet2r, doi: 10.1093/bioinformatics/btv301

Package to retrieve data from PsyGeNET database (www.psygenet.org) and to perform comorbidity studies with PsyGeNET's and user's data.

package bioconductor-psygenet2r

Versions:

1.30.0-0,  1.26.0-0,  1.24.0-0,  1.21.0-0,  1.20.0-0,  1.18.0-0,  1.16.0-1,  1.14.0-0,  1.12.0-0, 

1.30.0-0,  1.26.0-0,  1.24.0-0,  1.21.0-0,  1.20.0-0,  1.18.0-0,  1.16.0-1,  1.14.0-0,  1.12.0-0,  1.10.0-0

Depends:

• bioconductor-bgeedb >=2.24.0,<2.25.0

• bioconductor-biobase >=2.58.0,<2.59.0

• bioconductor-biomart >=2.54.0,<2.55.0

• bioconductor-go.db >=3.16.0,<3.17.0

• bioconductor-topgo >=2.50.0,<2.51.0

• r-base >=4.2,<4.3.0a0

• r-ggplot2

• r-igraph

• r-labeling

• r-rcurl

• r-reshape2

• r-stringr

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-psygenet2r

and update with:

conda update bioconductor-psygenet2r

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-psygenet2r:<tag>

(see bioconductor-psygenet2r/tags for valid values for <tag>)

Download stats

Link to this page

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