recipe bioconductor-psygenet2r

psygenet2r - An R package for querying PsyGeNET and to perform comorbidity studies in psychiatric disorders

Homepage

https://bioconductor.org/packages/3.14/bioc/html/psygenet2r.html

License

MIT + file LICENSE

Recipe

/bioconductor-psygenet2r/meta.yaml

Links

biotools: psygenet2r, doi: 10.1093/bioinformatics/btv301

Package to retrieve data from PsyGeNET database (www.psygenet.org) and to perform comorbidity studies with PsyGeNET's and user's data.

package bioconductor-psygenet2r

Versions

1.26.0-0,  1.24.0-0,  1.21.0-0,  1.20.0-0,  1.18.0-0,  1.16.0-1,  1.14.0-0,  1.12.0-0,  1.10.0-0

Depends

• bioconductor-bgeedb >=2.20.0,<2.21.0

• bioconductor-biobase >=2.54.0,<2.55.0

• bioconductor-biomart >=2.50.0,<2.51.0

• bioconductor-go.db >=3.14.0,<3.15.0

• bioconductor-topgo >=2.46.0,<2.47.0

• r-base >=4.1,<4.2.0a0

• r-ggplot2

• r-igraph

• r-labeling

• r-rcurl

• r-reshape2

• r-stringr

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-psygenet2r

and update with:

conda update bioconductor-psygenet2r

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-psygenet2r:<tag>

(see bioconductor-psygenet2r/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-psygenet2r/README.html)