recipe bioconductor-ptairdata

PTR-TOF-MS volatolomics raw datasets from exhaled air and cell culture headspace

Homepage:

https://bioconductor.org/packages/3.16/data/experiment/html/ptairData.html

License:

GPL-3

Recipe:

/bioconductor-ptairdata/meta.yaml

The package ptairData contains two raw datasets from Proton-Transfer-Reaction Time-of-Flight mass spectrometer acquisitions (PTR-TOF-MS), in the HDF5 format. One from the exhaled air of two volunteer healthy individuals with three replicates, and one from the cell culture headspace from two mycobacteria species and one control (culture medium only) with two replicates. Those datasets are used in the examples and in the vignette of the ptairMS package (PTR-TOF-MS data pre-processing). There are also used to gererate the ptrSet in the ptairMS data : exhaledPtrset and mycobacteriaSet

package bioconductor-ptairdata

Versions:

1.5.0-0,  1.2.0-1,  1.2.0-0,  1.0.0-0

Depends:

• bioconductor-data-packages >=20221103

• bioconductor-rhdf5 >=2.42.0,<2.43.0

• curl

• r-base >=4.2,<4.3.0a0

• r-signal

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-ptairdata

and update with:

conda update bioconductor-ptairdata

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-ptairdata:<tag>

(see bioconductor-ptairdata/tags for valid values for <tag>)

Download stats

Link to this page

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