recipe bioconductor-pth2o2lipids
  1. tricornutum HPLC-ESI-MS Lipid Data from van Creveld et al. (2015)

Homepage

https://bioconductor.org/packages/3.11/data/experiment/html/PtH2O2lipids.html

License

MIT + file LICENSE

Recipe

/bioconductor-pth2o2lipids/meta.yaml

Annotated HPLC-ESI-MS lipid data in positive ionization mode from an experiment in which cultures of the marine diatom Phaeodactylum tricornutum were treated with various concentrations of hydrogen peroxide (H2O2) to induce oxidative stress. The experiment is described in Graff van Creveld, et al., 2015, "Early perturbation in mitochondria redox homeostasis in response to environmental stress predicts cell fate in diatoms," ISME Journal 9:385-395. PtH2O2lipids consists of two objects: A CAMERA xsAnnotate object (ptH2O2lipids$xsAnnotate) and LOBSTAHS LOBSet object (ptH2O2lipids$xsAnnotate$LOBSet). The LOBSet includes putative compound assignments from the default LOBSTAHS database. Isomer annotation is recorded in three other LOBSet slots.

package bioconductor-pth2o2lipids

(downloads) docker_bioconductor-pth2o2lipids

Versions

1.14.0-01.12.0-01.10.0-11.8.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-pth2o2lipids

and update with:

conda update bioconductor-pth2o2lipids

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-pth2o2lipids:<tag>

(see bioconductor-pth2o2lipids/tags for valid values for <tag>)