recipe bioconductor-pumadata

Various data sets for use with the puma package

Homepage:

https://bioconductor.org/packages/3.18/data/experiment/html/pumadata.html

License:

LGPL

Recipe:

/bioconductor-pumadata/meta.yaml

This is a simple data package including various data sets derived from the estrogen data for use with the puma (Propagating Uncertainty in Microarray Analysis) package.

package bioconductor-pumadata

(downloads) docker_bioconductor-pumadata

versions:
2.38.0-0,  2.36.0-0,  2.34.0-0,  2.30.0-1,  2.30.0-0,  2.28.0-0,  2.26.0-1,  2.26.0-0,  2.24.0-0, 

2.38.0-0,  2.36.0-0,  2.34.0-0,  2.30.0-1,  2.30.0-0,  2.28.0-0,  2.26.0-1,  2.26.0-0,  2.24.0-0,  2.22.0-0,  2.20.0-1,  2.18.0-0

depends bioconductor-biobase:

>=2.62.0,<2.63.0

depends bioconductor-data-packages:

>=20231203

depends bioconductor-oligo:

>=1.66.0,<1.67.0

depends bioconductor-puma:

>=3.44.0,<3.45.0

depends curl:

depends r-base:

>=4.3,<4.4.0a0

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-pumadata

and update with::

   mamba update bioconductor-pumadata

To create a new environment, run:

mamba create --name myenvname bioconductor-pumadata

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-pumadata:<tag>

(see `bioconductor-pumadata/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-pumadata/README.html)