bioconductor-purecn

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This package estimates tumor purity, copy number, and loss of heterozygosity (LOH), and classifies single nucleotide variants (SNVs) by somatic status and clonality. PureCN is designed for targeted short read sequencing data, integrates well with standard somatic variant detection and copy number pipelines, and has support for tumor samples without matching normal samples.

Home http://bioconductor.org/packages/3.6/bioc/html/PureCN.html
Versions 1.6.3, 1.8.0
License Artistic-2.0
Recipe https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-purecn

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-purecn

and update with:

conda update bioconductor-purecn

docker

A Docker container is available at https://quay.io/repository/biocontainers/bioconductor-purecn.