bioconductor-purecn¶
This package estimates tumor purity, copy number, and loss of heterozygosity (LOH), and classifies single nucleotide variants (SNVs) by somatic status and clonality. PureCN is designed for targeted short read sequencing data, integrates well with standard somatic variant detection and copy number pipelines, and has support for tumor samples without matching normal samples.
| Home | http://bioconductor.org/packages/3.8/bioc/html/PureCN.html |
| Versions | 1.11.13, 1.11.20, 1.13.1, 1.6.3, 1.8.0 |
| License | Artistic-2.0 |
| Recipe | https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-purecn |
| Links | biotools: purecn |
Installation¶
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-purecn
and update with:
conda update bioconductor-purecn
A Docker container is available at https://quay.io/repository/biocontainers/bioconductor-purecn.
Link to this page¶
Render an 
badge with the following Markdown:
[](http://bioconda.github.io/recipes/bioconductor-purecn/README.html)
