recipe bioconductor-qpgraph

Estimation of genetic and molecular regulatory networks from high-throughput genomics data

Homepage

https://bioconductor.org/packages/3.10/bioc/html/qpgraph.html

License

GPL (>= 2)

Recipe

/bioconductor-qpgraph/meta.yaml

Links

biotools: qpgraph

Estimate gene and eQTL networks from high-throughput expression and genotyping assays.

package bioconductor-qpgraph

Versions

2.20.0-0, 2.18.0-1, 2.16.0-0, 2.14.0-0, 2.12.0-0

Depends

• bioconductor-annotate >=1.64.0,<1.65.0

• bioconductor-annotationdbi >=1.48.0,<1.49.0

• bioconductor-biobase >=2.46.0,<2.47.0

• bioconductor-biocparallel >=1.20.0,<1.21.0

• bioconductor-genomeinfodb >=1.22.0,<1.23.0

• bioconductor-genomicfeatures >=1.38.0,<1.39.0

• bioconductor-genomicranges >=1.38.0,<1.39.0

• bioconductor-graph >=1.64.0,<1.65.0

• bioconductor-iranges >=2.20.0,<2.21.0

• bioconductor-rgraphviz >=2.30.0,<2.31.0

• bioconductor-s4vectors >=0.24.0,<0.25.0

• libgcc-ng >=7.3.0

• r-base >=3.6,<3.7.0a0

• r-matrix >=1.0

• r-mvtnorm

• r-qtl

Required By

• bioconductor-clipper

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-qpgraph

and update with:

conda update bioconductor-qpgraph

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-qpgraph:<tag>

(see bioconductor-qpgraph/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-qpgraph/README.html)