recipe bioconductor-qpgraph

Estimation of genetic and molecular regulatory networks from high-throughput genomics data

Homepage

https://bioconductor.org/packages/3.14/bioc/html/qpgraph.html

License

GPL (>= 2)

Recipe

/bioconductor-qpgraph/meta.yaml

Links

biotools: qpgraph

Estimate gene and eQTL networks from high-throughput expression and genotyping assays.

package bioconductor-qpgraph

Versions

2.28.1-0,  2.28.0-0,  2.26.0-0,  2.24.3-0,  2.24.0-0,  2.22.0-0,  2.20.0-0,  2.18.0-1,  2.16.0-0, 

2.28.1-0,  2.28.0-0,  2.26.0-0,  2.24.3-0,  2.24.0-0,  2.22.0-0,  2.20.0-0,  2.18.0-1,  2.16.0-0,  2.14.0-0,  2.12.0-0

Depends

• bioconductor-annotate >=1.72.0,<1.73.0

• bioconductor-annotationdbi >=1.56.0,<1.57.0

• bioconductor-biobase >=2.54.0,<2.55.0

• bioconductor-biocparallel >=1.28.0,<1.29.0

• bioconductor-genomeinfodb >=1.30.0,<1.31.0

• bioconductor-genomicfeatures >=1.46.0,<1.47.0

• bioconductor-genomicranges >=1.46.0,<1.47.0

• bioconductor-graph >=1.72.0,<1.73.0

• bioconductor-iranges >=2.28.0,<2.29.0

• bioconductor-rgraphviz >=2.38.0,<2.39.0

• bioconductor-s4vectors >=0.32.0,<0.33.0

• libblas >=3.8.0,<4.0a0

• libgcc-ng >=10.3.0

• liblapack >=3.8.0,<4.0a0

• r-base >=4.1,<4.2.0a0

• r-matrix >=1.0

• r-mvtnorm

• r-qtl

Required By

• bioconductor-clipper

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-qpgraph

and update with:

conda update bioconductor-qpgraph

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-qpgraph:<tag>

(see bioconductor-qpgraph/tags for valid values for <tag>)

Download stats

Link to this page

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