recipe bioconductor-qpgraph

Estimate gene and eQTL networks from high-throughput expression and genotyping assays.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/qpgraph.html

License

GPL (>= 2)

Recipe

/bioconductor-qpgraph/meta.yaml

Links

biotools: qpgraph

package bioconductor-qpgraph

(downloads) docker_bioconductor-qpgraph

Versions

2.16.0-0, 2.14.0-0, 2.12.0-0

Depends bioconductor-annotate

>=1.60.0,<1.61.0

Depends bioconductor-annotationdbi

>=1.44.0,<1.45.0

Depends bioconductor-biobase

>=2.42.0,<2.43.0

Depends bioconductor-biocparallel

>=1.16.0,<1.17.0

Depends bioconductor-genomeinfodb

>=1.18.0,<1.19.0

Depends bioconductor-genomicfeatures

>=1.34.0,<1.35.0

Depends bioconductor-genomicranges

>=1.34.0,<1.35.0

Depends bioconductor-graph

>=1.60.0,<1.61.0

Depends bioconductor-iranges

>=2.16.0,<2.17.0

Depends bioconductor-rgraphviz

>=2.26.0,<2.27.0

Depends bioconductor-s4vectors

>=0.20.0,<0.21.0

Depends libgcc-ng

>=7.3.0

Depends r-base

>=3.5.1,<3.5.2.0a0

Depends r-matrix

>=1.0

Depends r-mvtnorm

Depends r-qtl

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-qpgraph

and update with:

conda update bioconductor-qpgraph

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-qpgraph:<tag>

(see bioconductor-qpgraph/tags for valid values for <tag>)