recipe bioconductor-qpgraph

Estimation of genetic and molecular regulatory networks from high-throughput genomics data

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/qpgraph.html

License:

GPL (>= 2)

Recipe:

/bioconductor-qpgraph/meta.yaml

Links:

biotools: qpgraph

Estimate gene and eQTL networks from high-throughput expression and genotyping assays.

package bioconductor-qpgraph

Versions:

2.32.0-0,  2.28.2-0,  2.28.1-0,  2.28.0-0,  2.26.0-0,  2.24.3-0,  2.24.0-0,  2.22.0-0,  2.20.0-0, 

2.32.0-0,  2.28.2-0,  2.28.1-0,  2.28.0-0,  2.26.0-0,  2.24.3-0,  2.24.0-0,  2.22.0-0,  2.20.0-0,  2.18.0-1,  2.16.0-0,  2.14.0-0,  2.12.0-0

Depends:

• bioconductor-annotate >=1.76.0,<1.77.0

• bioconductor-annotationdbi >=1.60.0,<1.61.0

• bioconductor-biobase >=2.58.0,<2.59.0

• bioconductor-biocparallel >=1.32.0,<1.33.0

• bioconductor-genomeinfodb >=1.34.0,<1.35.0

• bioconductor-genomicfeatures >=1.50.0,<1.51.0

• bioconductor-genomicranges >=1.50.0,<1.51.0

• bioconductor-graph >=1.76.0,<1.77.0

• bioconductor-iranges >=2.32.0,<2.33.0

• bioconductor-rgraphviz >=2.42.0,<2.43.0

• bioconductor-s4vectors >=0.36.0,<0.37.0

• libblas >=3.9.0,<4.0a0

• libgcc-ng >=12

• liblapack >=3.9.0,<4.0a0

• r-base >=4.2,<4.3.0a0

• r-matrix >=1.5-0

• r-mvtnorm

• r-qtl

Required By:

• bioconductor-clipper

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-qpgraph

and update with:

conda update bioconductor-qpgraph

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-qpgraph:<tag>

(see bioconductor-qpgraph/tags for valid values for <tag>)

Download stats

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