recipe bioconductor-qpgraph

Estimation of genetic and molecular regulatory networks from high-throughput genomics data

Homepage

https://bioconductor.org/packages/3.13/bioc/html/qpgraph.html

License

GPL (>= 2)

Recipe

/bioconductor-qpgraph/meta.yaml

Links

biotools: qpgraph

Estimate gene and eQTL networks from high-throughput expression and genotyping assays.

package bioconductor-qpgraph

Versions

2.26.0-0,  2.24.3-0,  2.24.0-0,  2.22.0-0,  2.20.0-0,  2.18.0-1,  2.16.0-0,  2.14.0-0,  2.12.0-0

Depends

• bioconductor-annotate >=1.70.0,<1.71.0

• bioconductor-annotationdbi >=1.54.0,<1.55.0

• bioconductor-biobase >=2.52.0,<2.53.0

• bioconductor-biocparallel >=1.26.0,<1.27.0

• bioconductor-genomeinfodb >=1.28.0,<1.29.0

• bioconductor-genomicfeatures >=1.44.0,<1.45.0

• bioconductor-genomicranges >=1.44.0,<1.45.0

• bioconductor-graph >=1.70.0,<1.71.0

• bioconductor-iranges >=2.26.0,<2.27.0

• bioconductor-rgraphviz >=2.36.0,<2.37.0

• bioconductor-s4vectors >=0.30.0,<0.31.0

• libblas >=3.8.0,<4.0a0

• libgcc-ng >=9.3.0

• liblapack >=3.8.0,<4.0a0

• r-base >=4.1,<4.2.0a0

• r-matrix >=1.0

• r-mvtnorm

• r-qtl

Required By

• bioconductor-clipper

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-qpgraph

and update with:

conda update bioconductor-qpgraph

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-qpgraph:<tag>

(see bioconductor-qpgraph/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-qpgraph/README.html)