recipe bioconductor-qtlexperiment

S4 classes for QTL summary statistics and metadata

Homepage:

https://bioconductor.org/packages/3.18/bioc/html/QTLExperiment.html

License:

GPL-3

Recipe:

/bioconductor-qtlexperiment/meta.yaml

QLTExperiment defines an S4 class for storing and manipulating summary statistics from QTL mapping experiments in one or more states. It is based on the 'SummarizedExperiment' class and contains functions for creating, merging, and subsetting objects. 'QTLExperiment' also stores experiment metadata and has checks in place to ensure that transformations apply correctly.

package bioconductor-qtlexperiment

versions:

1.0.0-0

depends bioconductor-biocgenerics:

>=0.48.0,<0.49.0

depends bioconductor-s4vectors:

>=0.40.0,<0.41.0

depends bioconductor-summarizedexperiment:

>=1.32.0,<1.33.0

depends r-ashr:

depends r-base:

>=4.3,<4.4.0a0

depends r-checkmate:

depends r-collapse:

depends r-dplyr:

depends r-rlang:

depends r-tibble:

depends r-tidyr:

depends r-vroom:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-qtlexperiment

and update with::

   mamba update bioconductor-qtlexperiment

To create a new environment, run:

mamba create --name myenvname bioconductor-qtlexperiment

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-qtlexperiment:<tag>

(see `bioconductor-qtlexperiment/tags`_ for valid values for ``<tag>``)

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